Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26820 156 / 2e-45 ATPP2-A3 phloem protein 2-A3 (.1) AT1G33970 146 / 2e-43 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) AT1G33960 144 / 2e-41 AIG1 AVRRPT2-INDUCED GENE 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G09940 144 / 2e-41 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G33950 141 / 8e-41 Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2) AT1G33930 140 / 4e-40 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G33830 132 / 2e-38 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G33910 133 / 5e-38 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G09930 131 / 7e-37 Avirulence induced gene (AIG1) family protein (.1) AT4G09950 131 / 9e-37 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005300 [exp] 219 / 5e-70 AT1G33970 321 / 7e-109 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Lus10005299 [exp] 184 / 3e-56 AT1G33970 339 / 5e-115 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Lus10003732 [exp] 149 / 1e-43 AT1G33970 210 / 1e-65 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Lus10028023 [exp] 138 / 3e-40 AT4G09940 181 / 2e-55 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10009482 [exp] 115 / 1e-31 AT1G33970 148 / 9e-43 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Lus10009485 [exp] 98 / 1e-25 AT1G33970 142 / 2e-42 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Lus10009483 [exp] 78 / 2e-18 AT1G33970 91 / 3e-23 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Lus10003507 [exp] 74 / 2e-17 AT1G33930 82 / 3e-20 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10009484 [exp] 69 / 2e-13 AT4G26220 255 / 1e-83 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G104800 [exp] 196 / 6e-62 AT1G33970 314 / 3e-106 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Potri.019G077300 [exp] 194 / 4e-61 AT1G33970 345 / 2e-118 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Potri.009G131200 [exp] 45 / 2e-05 AT3G16620 1129 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Potri.004G171600 [exp] 45 / 2e-05 AT3G16620 1128 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Potri.009G131300 [exp] 42 / 0.0002 AT3G16620 1111 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF04548 [flax] [poplar] AIG1 AIG1 family
Representative CDS sequence Show only first row Show all	>Lus10026891 pacid=23142888 polypeptide=Lus10026891 locus=Lus10026891.g ID=Lus10026891.BGIv1.0 annot-version=v1.0 ATGGAAAATGAGAAGGAGTTGGTTACACCTTATAATACTGGTGTTGGAACCGTCGTTTTATGTGGACGTACTGGTAACAGGAAGAGTGCTACCGGGAACA CCATTCTCGTCGAAAAGTGCTTCAAGTCTATGGTCAGTTCATCTGCTGTCACAACTTGCTACGATTTGCAGACGACTCTTATAGAAGATGGTCAAATCTT AAACGTCATCGACACTCCTGCACTGCTTGGAAGTTGCGTTGAATCTGATTCTCTTGGCAAGGCAATCGTAAATATGGCCAGAAACAAGATCCCTGCAGTC ATTCTTGTGTTATCATTAAGCAATCGCTTCACGGAAGAGGAAGAAGCAGCAATTCGTTGCCTCCAGTGTTTGTTCGGACGAAAGATAATGTACTACACGA TTGTAGCGTTCACCGGTAGAGATAAACTTGAGGAGGAGGGTATTAAAACTTTGAATGAGTATTTATTTGGGTCGCAACTGTCCTCGGTCGTTAAAGAGTT GTATGGATCGATGCCGGAAATTCTAGCACTTTGCGACAATCGGATGCTGCTGTTTGATAACCACACGAACGATGAAGTCAATAGAGTCGAACAGGTTAGG CAGCTAATGACACTAGTAGACGGAATCGCTGTGCAGAATGGCGGGGAGTAA
AA sequence Show only first row Show all	>Lus10026891 pacid=23142888 polypeptide=Lus10026891 locus=Lus10026891.g ID=Lus10026891.BGIv1.0 annot-version=v1.0 MENEKELVTPYNTGVGTVVLCGRTGNRKSATGNTILVEKCFKSMVSSSAVTTCYDLQTTLIEDGQILNVIDTPALLGSCVESDSLGKAIVNMARNKIPAV ILVLSLSNRFTEEEEAAIRCLQCLFGRKIMYYTIVAFTGRDKLEEEGIKTLNEYLFGSQLSSVVKELYGSMPEILALCDNRMLLFDNHTNDEVNRVEQVR QLMTLVDGIAVQNGGE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26820		ATPP2-A3	phloem protein 2-A3 (.1)		Lus10026891 [exp]	0	1
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10037323 [exp]	1.0	0.8990
					Lus10019981 [exp]	6.9	0.8896
AT4G11650		ATOSM34	osmotin 34 (.1)		Lus10017170 [exp]	8.7	0.8211
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10025506 [exp]	9.8	0.8676
AT1G76520			Auxin efflux carrier family pr...		Lus10013200 [exp]	16.0	0.8531
AT4G34480			O-Glycosyl hydrolases family 1...		Lus10039923 [exp]	16.6	0.6067
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Lus10015748 [exp]	17.1	0.6592
AT1G04670			unknown protein		Lus10004041 [exp]	18.2	0.8487
AT5G60010			ferric reductase-like transmem...		Lus10019390 [exp]	19.9	0.8487
					Lus10027066 [exp]	21.5	0.8487

Compare expression of checked genes

Lus10026891 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.