Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25050 609 / 0 Major facilitator superfamily protein (.1) AT1G79710 570 / 0 Major facilitator superfamily protein (.1) AT5G25040 512 / 5e-179 Major facilitator superfamily protein (.1.2.3) AT5G10820 402 / 8e-136 Major facilitator superfamily protein (.1) AT2G32040 193 / 4e-55 Major facilitator superfamily protein (.1) AT5G54860 111 / 3e-26 Major facilitator superfamily protein (.1) AT1G04570 103 / 2e-23 Major facilitator superfamily protein (.1) AT2G33280 83 / 6e-17 Major facilitator superfamily protein (.1) AT1G64890 78 / 4e-15 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003419 [exp] 943 / 0 AT5G25050 625 / 0.0 Major facilitator superfamily protein (.1) Lus10041620 [exp] 572 / 0 AT1G79710 644 / 0.0 Major facilitator superfamily protein (.1) Lus10024099 [exp] 563 / 0 AT1G79710 630 / 0.0 Major facilitator superfamily protein (.1) Lus10026890 [exp] 447 / 2e-152 AT5G10820 558 / 0.0 Major facilitator superfamily protein (.1) Lus10006106 [exp] 210 / 6e-61 AT2G32040 721 / 0.0 Major facilitator superfamily protein (.1) Lus10010565 [exp] 203 / 1e-58 AT2G32040 721 / 0.0 Major facilitator superfamily protein (.1) Lus10037809 [exp] 117 / 4e-28 AT5G54860 630 / 0.0 Major facilitator superfamily protein (.1) Lus10023708 [exp] 87 / 5e-18 AT1G04570 451 / 3e-154 Major facilitator superfamily protein (.1) Lus10017090 [exp] 84 / 4e-17 AT5G54860 391 / 3e-133 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G017100 [exp] 757 / 0 AT5G25050 580 / 0.0 Major facilitator superfamily protein (.1) Potri.006G266000 [exp] 740 / 0 AT5G25050 579 / 0.0 Major facilitator superfamily protein (.1) Potri.001G041600 [exp] 586 / 0 AT1G79710 586 / 0.0 Major facilitator superfamily protein (.1) Potri.006G265500 [exp] 483 / 3e-167 AT5G10820 620 / 0.0 Major facilitator superfamily protein (.1) Potri.018G017400 [exp] 482 / 8e-166 AT5G10820 612 / 0.0 Major facilitator superfamily protein (.1) Potri.010G085900 [exp] 204 / 3e-59 AT2G32040 650 / 0.0 Major facilitator superfamily protein (.1) Potri.011G137400 [exp] 125 / 6e-31 AT5G54860 609 / 0.0 Major facilitator superfamily protein (.1) Potri.011G137300 [exp] 124 / 2e-30 AT5G54860 633 / 0.0 Major facilitator superfamily protein (.1) Potri.010G063800 [exp] 93 / 5e-20 AT1G04570 523 / 0.0 Major facilitator superfamily protein (.1) Potri.019G043000 [exp] 91 / 2e-19 AT1G64890 488 / 3e-171 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF03092 [flax] [poplar] BT1 BT1 family
Representative CDS sequence Show only first row Show all	>Lus10026893 pacid=23142924 polypeptide=Lus10026893 locus=Lus10026893.g ID=Lus10026893.BGIv1.0 annot-version=v1.0 ATGGTAGAGGATGAGAATGAGGAAGCATGTGGTGGTGAGGTGATGGAGGTAAAGGGATCTTGTTGTTGGTGTGATTGCTTGTGGACTCCGCTGAACTGGT TTAAAATGCTTGCTAAGGAGACCCACTGGAGCTTTGTCTATGGGGTTTTGATCGTTTATGGGATCAGCCAAGGGTTTGGAGGAGCTTTCTCTCGGGTTGG AACTGAGTATTATATGAAGGATGTTCAAAAGGTGCAGCCTTCTGAGTCCCAGATTTATCAAGGCCTCATCTCAATCCCTTGGCTTGTCAAGCCTATTTGG GGCCTCCTCACTGATGTAATCCCCATCTTAGGCTATCGAAGACGCCCTTACTTCATTCTAGCTGGACTGATTGGCATGGCTTCAATGCTTCTGTTGTCAT TGGGTGAGAAGATGCACTTAGCGTTAGCTCTTTTGCTTTTGATAACTGGAAGTGCTAGTGTTGCAATAGCAGATGTAACGGTAGATGCCTGTGTGGCGCA ACAGAGCAATGTCCATCATTCCCTTGCTGCTGATATGCAAAGCTTGTGTGCTTTGAGTTCATCCGTTGGAGCTTTAGTTGGATTTGGTTTCAGTGGCATA TTTGTTCATCTCCTTGGCCCAAAGGGAGTTTTCGGACTGTTAGCAATCCCAGCTGGACTTGTGTTATCGGTAGGAGTTCTGCTTGAAGAGCCTTTCATGA CTGATTTCAGTTACAGACAGGTAAGCCATAGGTTTCTTGCAGCTGGGAAGGCAATGTGGACCACTCTGAACTTCCCAGAAGTATGGAGACCATGCATGTA TATGTACCTATCTCTCGCTTTGAGTGTCAATATTGATGAAGGCTTGTTCTACTGGTATACCGACTCGAAGGATGGTCCTTCTTTTTCTCAGGAAACTGTT GGTTTCATATTCTCGATAGCCTCGATCGGATCTCTCTTGGGGGCTATACTATACCAGAATGTTCTAAAGGATCATCCTTTCCGCAACTTGCTTTTCTGGA CTCAACTTCTGTCTGGTATAGCTGGGATGCTGGATTTGATTCTGGTGCTGAGATTGAACTTGAAATTTGGCATGCCGGATTACTTCTTTGCTGTGATTGA TAAGAGTGTGATTCAGATGATTGGGAGGCTGAAATGGATGCCCCTTCTTGTGTTGAGCTCCAAGTTATGCCCTCCTGGAATTGAAGGAACTTTCTTTGCT CTCCTTATGTCCATTGACAATCTCGGCACTCTCTCGTCTTCATGGGGAGGTGGAATCCTCTTGCACCTGATGAACGTCACTCGAACGAATTTCGACAACC TCTGGCTTGTCATCATCCTGAGGAATGTGTTGAGAATCGCTCCGCTTGTGTTGCTATTTTTGATCCCTGCTGGTGATCCAAATGCTTCCATACTTCCAAC GGAGATCATGGATGTGAAAGAAAGAACAGGGAATGCTGAAAATGGAAACTTGGAATTGGTGTCCTTGGTTAGTAGCACTGATGATCATACGGGTAAGTAG
AA sequence Show only first row Show all	>Lus10026893 pacid=23142924 polypeptide=Lus10026893 locus=Lus10026893.g ID=Lus10026893.BGIv1.0 annot-version=v1.0 MVEDENEEACGGEVMEVKGSCCWCDCLWTPLNWFKMLAKETHWSFVYGVLIVYGISQGFGGAFSRVGTEYYMKDVQKVQPSESQIYQGLISIPWLVKPIW GLLTDVIPILGYRRRPYFILAGLIGMASMLLLSLGEKMHLALALLLLITGSASVAIADVTVDACVAQQSNVHHSLAADMQSLCALSSSVGALVGFGFSGI FVHLLGPKGVFGLLAIPAGLVLSVGVLLEEPFMTDFSYRQVSHRFLAAGKAMWTTLNFPEVWRPCMYMYLSLALSVNIDEGLFYWYTDSKDGPSFSQETV GFIFSIASIGSLLGAILYQNVLKDHPFRNLLFWTQLLSGIAGMLDLILVLRLNLKFGMPDYFFAVIDKSVIQMIGRLKWMPLLVLSSKLCPPGIEGTFFA LLMSIDNLGTLSSSWGGGILLHLMNVTRTNFDNLWLVIILRNVLRIAPLVLLFLIPAGDPNASILPTEIMDVKERTGNAENGNLELVSLVSSTDDHTGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25050			Major facilitator superfamily ...		Lus10026893 [exp]	0	1
AT1G63690		ATSPPL2	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10032285 [exp]	6.5	0.7447
AT3G19553			Amino acid permease family pro...		Lus10040966 [exp]	7.3	0.7651
AT1G58350		ZW18	Putative serine esterase fami...		Lus10036214 [exp]	13.1	0.7402
AT1G05500		SYT5, NTMCTYPE2...	synaptotagmin 5, ARABIDOPSIS T...		Lus10038117 [exp]	15.0	0.7191
AT5G21990		OEP61, TPR7	tetratricopeptide repeat 7, ou...		Lus10019379 [exp]	16.7	0.7259
AT1G51590		MNS1, MANIB	ALPHA-MANNOSIDASE IB, alpha-ma...		Lus10034820 [exp]	18.6	0.7439
AT5G35840		PHYC	phytochrome C (.1)		Lus10006388 [exp]	19.9	0.7129
AT4G10110			RNA-binding (RRM/RBD/RNP motif...		Lus10030350 [exp]	23.5	0.6857
AT1G60780		HAP13	HAPLESS 13, Clathrin adaptor c...		Lus10026688 [exp]	25.0	0.7214
AT1G75980			Single hybrid motif superfamil...		Lus10005613 [exp]	26.7	0.6173

Compare expression of checked genes

Lus10026893 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.