Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50310 187 / 1e-57 MKKK20, MAPKKK20 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) AT4G36950 181 / 3e-55 MAPKKK21 mitogen-activated protein kinase kinase kinase 21 (.1) AT5G67080 172 / 8e-52 MAPKKK19 mitogen-activated protein kinase kinase kinase 19 (.1) AT5G27510 169 / 6e-51 Protein kinase superfamily protein (.1) AT3G46140 166 / 7e-49 Protein kinase superfamily protein (.1) AT2G42550 158 / 2e-46 Protein kinase superfamily protein (.1) AT3G45790 157 / 2e-45 Protein kinase superfamily protein (.1) AT5G12090 155 / 5e-45 Protein kinase superfamily protein (.1) AT2G41930 151 / 1e-43 Protein kinase superfamily protein (.1) AT2G05060 150 / 1e-43 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034242 [exp] 417 / 2e-148 AT3G50310 190 / 2e-58 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10034288 [exp] 334 / 1e-115 AT3G50310 181 / 5e-55 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10034285 [exp] 332 / 1e-114 AT5G27510 183 / 6e-56 Protein kinase superfamily protein (.1) Lus10029023 [exp] 300 / 2e-103 AT3G50310 147 / 8e-43 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10034246 [exp] 271 / 4e-92 AT4G36950 107 / 7e-28 mitogen-activated protein kinase kinase kinase 21 (.1) Lus10039141 [exp] 262 / 3e-87 AT3G46140 168 / 1e-49 Protein kinase superfamily protein (.1) Lus10017114 [exp] 224 / 1e-72 AT3G50310 127 / 3e-34 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10029019 [exp] 201 / 2e-65 AT3G50310 96 / 3e-24 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10012668 [exp] 178 / 6e-54 AT3G50310 347 / 5e-119 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G042400 [exp] 184 / 9e-56 AT3G50310 236 / 5e-75 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Potri.003G184200 [exp] 180 / 4e-54 AT4G36950 246 / 8e-79 mitogen-activated protein kinase kinase kinase 21 (.1) Potri.009G131100 [exp] 171 / 7e-52 AT3G50310 200 / 4e-62 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Potri.006G181000 [exp] 168 / 4e-50 AT3G45670 213 / 4e-66 Protein kinase superfamily protein (.1) Potri.007G044800 [exp] 167 / 2e-49 AT5G67080 350 / 6e-120 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.005G139300 [exp] 162 / 5e-48 AT5G67080 329 / 6e-112 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.005G139200 [exp] 161 / 2e-47 AT5G67080 305 / 2e-102 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.004G171500 [exp] 158 / 1e-46 AT3G50310 202 / 7e-63 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Potri.014G155000 [exp] 146 / 2e-41 AT1G05100 317 / 3e-107 mitogen-activated protein kinase kinase kinase 18 (.1) Potri.004G007700 [exp] 142 / 3e-39 AT5G55090 321 / 2e-105 mitogen-activated protein kinase kinase kinase 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10026894 pacid=23142886 polypeptide=Lus10026894 locus=Lus10026894.g ID=Lus10026894.BGIv1.0 annot-version=v1.0 ATGGCAGTGAAATCGGCGCCGGCGAATGAAGCTTCCTCCCTCGTCTCGGAGTTCGACATTCTTTCTAAGTTCCGAAACGTTCCGGGGATAATCCAGTGCC TCGGCGAAGACGTCTCCGATGACGGATTACCAAGCGGCGAGATGACTTACAATCTGTTTCTGGAGTACGCCGCCGAAGGGTCTCTCTCCGACATAATCGA CTACTACGGCGCTACAGGAATCCCGGAGAAGTACGTAAAGGTCTTCACTTTATCCCTCTTGGAAGCTCTGTTTTCCGTCCACTCTGCCGGTTACACCCAC TGCGATATCAAGCCGGATAACGTCCTCGTCTTTCACGACGCGGAAGACGCCGGAATGTGCCATGTGAAGATCGCTGATTTTGGGCTGGCGATGGAGACTC CGACTGAGAGCAGCGGGAATTTCAGGGGGACGGTGAGGTACTTGCCGCCGGAGGTCATCGTCTCCGGGAAAGTGTCGCCGGCGATGGACATCTGGGCGTT AGGGTGTACGGTGGTCGAGATGCTGACCGGGAAGCTTCCGTTCTCGAAGTTGAAGGATAATAAGCAAGTGATGGGGAGAATCGCCAACGGAGGTCAGCCG GAGATTCCTGACTGGCTGTCGGAAGAAGGAAAAGATTTTTTGAGCAAGTGTTTTGTGAGGGGCTCAGCTTTCCGATTGCCAGCGCATAAGTTGCTCTCGC ATCCTTTCGCAACCGGTCGGAGTTTGGAGAAGCGGCAGAGAACAATGCCTCAAGTGCAGCAGCAGTTGCCGAAGAAGCAGGAATTGCATCAGATTTTTGA AAGAGCCTTGGCTGTTCTGCGATGTTAG
AA sequence Show only first row Show all	>Lus10026894 pacid=23142886 polypeptide=Lus10026894 locus=Lus10026894.g ID=Lus10026894.BGIv1.0 annot-version=v1.0 MAVKSAPANEASSLVSEFDILSKFRNVPGIIQCLGEDVSDDGLPSGEMTYNLFLEYAAEGSLSDIIDYYGATGIPEKYVKVFTLSLLEALFSVHSAGYTH CDIKPDNVLVFHDAEDAGMCHVKIADFGLAMETPTESSGNFRGTVRYLPPEVIVSGKVSPAMDIWALGCTVVEMLTGKLPFSKLKDNKQVMGRIANGGQP EIPDWLSEEGKDFLSKCFVRGSAFRLPAHKLLSHPFATGRSLEKRQRTMPQVQQQLPKKQELHQIFERALAVLRC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50310		MKKK20, MAPKKK2...	MAPKK kinase 20, mitogen-activ...		Lus10026894 [exp]	0	1
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10030517 [exp]	2.4	0.8864
AT5G01900	WRKY	ATWRKY62, WRKY6...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10022736 [exp]	4.0	0.9021
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10014177 [exp]	4.2	0.8764
AT3G27540			beta-1,4-N-acetylglucosaminylt...		Lus10035231 [exp]	6.6	0.8682
AT2G15220			Plant basic secretory protein ...		Lus10013866 [exp]	6.8	0.7846
					Lus10013266 [exp]	8.9	0.7910
AT3G27540			beta-1,4-N-acetylglucosaminylt...		Lus10003666 [exp]	9.8	0.8550
AT3G07320			O-Glycosyl hydrolases family 1...		Lus10025892 [exp]	10.5	0.8449
AT1G75860			unknown protein		Lus10033130 [exp]	11.4	0.8582
					Lus10039441 [exp]	19.9	0.8179

Compare expression of checked genes

Lus10026894 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.