Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31780 721 / 0 UGT81A1, EMB2797, MGDA, MGD1 UDP-glycosyl transferase 81A1, MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE A, EMBRYO DEFECTIVE 2797, monogalactosyl diacylglycerol synthase 1 (.1.2) AT2G11810 512 / 3e-179 ATMGD3, MGDC MONOGALACTOSYL DIACYLGLYCEROL SYNTHASE 3, monogalactosyldiacylglycerol synthase type C (.1.2) AT5G20410 493 / 1e-171 ATMGD2, MGD2 ARABIDOPSIS THALIANA MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 2, monogalactosyldiacylglycerol synthase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003418 [exp] 941 / 0 AT4G31780 764 / 0.0 UDP-glycosyl transferase 81A1, MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE A, EMBRYO DEFECTIVE 2797, monogalactosyl diacylglycerol synthase 1 (.1.2) Lus10016359 [exp] 491 / 7e-171 AT5G20410 686 / 0.0 ARABIDOPSIS THALIANA MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 2, monogalactosyldiacylglycerol synthase 2 (.1) Lus10008048 [exp] 489 / 1e-169 AT5G20410 686 / 0.0 ARABIDOPSIS THALIANA MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 2, monogalactosyldiacylglycerol synthase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G266500 [exp] 771 / 0 AT4G31780 743 / 0.0 UDP-glycosyl transferase 81A1, MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE A, EMBRYO DEFECTIVE 2797, monogalactosyl diacylglycerol synthase 1 (.1.2) Potri.018G016600 [exp] 751 / 0 AT4G31780 723 / 0.0 UDP-glycosyl transferase 81A1, MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE A, EMBRYO DEFECTIVE 2797, monogalactosyl diacylglycerol synthase 1 (.1.2) Potri.006G063300 [exp] 498 / 1e-173 AT5G20410 691 / 0.0 ARABIDOPSIS THALIANA MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 2, monogalactosyldiacylglycerol synthase 2 (.1) Potri.018G123000 [exp] 496 / 1e-172 AT5G20410 668 / 0.0 ARABIDOPSIS THALIANA MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 2, monogalactosyldiacylglycerol synthase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF04101 [flax] [poplar] Glyco_tran_28_C Glycosyltransferase family 28 C-terminal domain CL0113 [flax] [poplar] GT-B PF06925 [flax] [poplar] MGDG_synth Monogalactosyldiacylglycerol (MGDG) synthase
Representative CDS sequence Show only first row Show all	>Lus10026895 pacid=23142965 polypeptide=Lus10026895 locus=Lus10026895.g ID=Lus10026895.BGIv1.0 annot-version=v1.0 ATGCAGCAGTCATCGGCGGTAGCTCAGGATTCCGCCCCCGTTTCCGATTTGGTAGCTCGATTCGGTCGTTTTGCGTTCGACCCCGCCGCAAATTCTAATG GGTCATGTTCTTTTCGCTCCAATTCTTTGTACTTTGATAGAAAGAAGATCATTAGCAGCAGCAGCAGTAGGAGCAGGGTAGCCGCTTCCTTGAGACTGGG AGGAGGGGCCAGTTCGAGTTACAGGACGGCTTGGAATGAGTTCAATAGGTTTATTAGGACTCACTGCGCTAGAATCCCTATCGGCTTCGCTTCTCTTCGG GTTGGTCCAGCGGATTCCGCTACTACTAACAGCAACGGGTTGAGCGATGGGGGTGGTGATGTTTTGGCGGATGATGGGCTGCCTTTAAATGGTGTTGAGA TTGAAGGTCCCAAAAAAGTTCTGATTTTGATGAGTGACACTGGTGGTGGCCATAGAGCTTCCGCTGAGGCTATCAAGCAAGCCTTCAGTGAACAATTTGG TGATGATTATCAGGTGTTCGTTACTGATCTGTGGTCAGAGCACACACCGTGGCCGTTTAACCAACTGCCTAGGAGTTATAATTTTTTGGTTAAACACGGT ACATTGTGGAAACTGACATACTATGGAACTGCACCACGGCTAATTCATCAGTCAAATTTCGCTGCCACTTCAACATTTATAGCTCGGGAAGTTGCCAAAG GGTTAATGAAGTACAAGCCTGACATTATCATTAGTGTTCACCCACTGATGCAGCATGTTCCTCTTCGTATATTGCGGGCAAAAGGTCTTCTAAGGAAGAT AGTATTTACTACAGTAGTTACAGATCTTAGTACTTGCCATCCAACATGGTTCCATAAGCTTGTTACAAGATGTTATTGTCCATCGCCAGATGTAGCTAAG AGAGCTTTGAAAGCTGGGCTGGAGCCTGCCCAAATTAAGATCTTTGGTCTTCCTGTTCGACCTTCCTTTGTTAAACCTGTTCTACCAAAGGTGGAACTAA GGAGGGAACTGGGAATGGATGCAGACCTTCCTGCTGTTCTCTTGATGGGGGGCGGAGAAGGGATGGGACCCATTGAGGCAACTGCACGAGCACTTGGTGA TTCTTTATATGACGAGGACCTTGGACAACCAACTGGCCAAGTCCTCGTCATATGTGGCCGCAATAAAAAGCTTGCTAATAGATTGGCATTAATCGATTGG AAGATTCCTGTCCAGGTGAAGGGTTTTGTCACTAAAATGGAAGAATGCATGGGTGCATGTGATTGCATCATAACCAAGGCTGGCCCGGGGACAATTGCAG AAGCGATGATACGCGGCCTTCCGATTATTTTGAATGATTTCATTGCAGGACAAGAAGTAGGTAATGTACCGTACGTGGTGCAGAATGGATGCGGGAAGTT CTCAAAATCGCCCAAAGAAATAGCAAGCATAGTTGCTCAATGGTTTGGTCCAAAGAAAGAGGAACTTAAGGTGATGTCCCAGAATGCTCTCAAGTTGGCT AGACCAGATGCAGTTGTGAAGATTGTCAACGATATGCATGAATTGGTTAGGCAGCGGAGTTATGTCCCTCACTTATCCTGTGCTGCAACTTAA
AA sequence Show only first row Show all	>Lus10026895 pacid=23142965 polypeptide=Lus10026895 locus=Lus10026895.g ID=Lus10026895.BGIv1.0 annot-version=v1.0 MQQSSAVAQDSAPVSDLVARFGRFAFDPAANSNGSCSFRSNSLYFDRKKIISSSSSRSRVAASLRLGGGASSSYRTAWNEFNRFIRTHCARIPIGFASLR VGPADSATTNSNGLSDGGGDVLADDGLPLNGVEIEGPKKVLILMSDTGGGHRASAEAIKQAFSEQFGDDYQVFVTDLWSEHTPWPFNQLPRSYNFLVKHG TLWKLTYYGTAPRLIHQSNFAATSTFIAREVAKGLMKYKPDIIISVHPLMQHVPLRILRAKGLLRKIVFTTVVTDLSTCHPTWFHKLVTRCYCPSPDVAK RALKAGLEPAQIKIFGLPVRPSFVKPVLPKVELRRELGMDADLPAVLLMGGGEGMGPIEATARALGDSLYDEDLGQPTGQVLVICGRNKKLANRLALIDW KIPVQVKGFVTKMEECMGACDCIITKAGPGTIAEAMIRGLPIILNDFIAGQEVGNVPYVVQNGCGKFSKSPKEIASIVAQWFGPKKEELKVMSQNALKLA RPDAVVKIVNDMHELVRQRSYVPHLSCAAT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31780		UGT81A1, EMB279...	UDP-glycosyl transferase 81A1,...		Lus10026895 [exp]	0	1
AT2G21340			MATE efflux family protein (.1...		Lus10017964 [exp]	4.2	0.8905
AT4G31780		UGT81A1, EMB279...	UDP-glycosyl transferase 81A1,...		Lus10003418 [exp]	4.2	0.8396
AT5G22830		MRS2-11, GMN10,...	MAGNESIUM TRANSPORTER 10, magn...		Lus10020517 [exp]	4.8	0.9017
AT4G13150			unknown protein		Lus10038175 [exp]	4.9	0.8640
AT1G08470		SSL3	strictosidine synthase-like 3 ...		Lus10008451 [exp]	6.2	0.8738
AT1G71090			Auxin efflux carrier family pr...		Lus10004059 [exp]	7.1	0.8409
AT1G70210		ATCYCD1;1, CYCD...	CYCLIN D1;1 (.1)		Lus10010709 [exp]	8.7	0.8449
AT3G53130		CYP97C1, LUT1	LUTEIN DEFICIENT 1, CYTOCHROME...		Lus10014399 [exp]	12.6	0.8608
AT2G21340			MATE efflux family protein (.1...		Lus10041955 [exp]	14.0	0.8644
AT5G22830		MRS2-11, GMN10,...	MAGNESIUM TRANSPORTER 10, magn...		Lus10005365 [exp]	14.7	0.8735

Compare expression of checked genes

Lus10026895 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.