Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31600 229 / 4e-74 unknown protein AT3G53860 211 / 3e-67 unknown protein AT1G05860 204 / 2e-64 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025558 [exp] 390 / 1e-137 AT2G31600 239 / 7e-78 unknown protein Lus10003417 [exp] 314 / 5e-108 AT2G31600 157 / 2e-47 unknown protein Lus10027016 [exp] 164 / 3e-51 AT2G31600 131 / 2e-38 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G035200 [exp] 262 / 4e-87 AT2G31600 238 / 2e-77 unknown protein Potri.007G126300 [exp] 261 / 6e-87 AT2G31600 244 / 2e-80 unknown protein Potri.010G180200 [exp] 205 / 4e-65 AT1G05860 180 / 1e-55 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026896 pacid=23142855 polypeptide=Lus10026896 locus=Lus10026896.g ID=Lus10026896.BGIv1.0 annot-version=v1.0 ATGACGGCGGCCGCCAAGCACCACCGCAGCCAACTACCGTCTACCTCCAAACAACCCCGCAATAATCCCAACCCCAGCACCGGCGCCGTCGCTCTTCCCG CACCTCCTCAAACCACAAACCCCAACCCTACCTCCTCTGCCACCGCCGCCGTCACCTCGCCGATCACTCTCTTCGATAGAAACCACCCACTCTCCCATGC CACTCTCCTCACCCGGCACGAATTGCTGAAGCGTAGGTCTCACCATCTGAAACAGCTCCTGCAATGCTACAAGGACCACTACTGGGCTCTGATGGAGGAG GTCAAGGTCCAGCACCGAGAGTACTACTGGAAGTACGGCGTCAGTCCTATCAAAGACGATCGGAAGCAGCAGGATCCGGGGGAGAACGGCAACATTGCGG AGGTTATGGACGAGAGTACCAATTTCGGGAGTGGCGTCGGAGGCAATTTGCCTTGGAACTACAATAATAATAGTAATTCGAGCAAAGGGGAAATTGAATT GAAGAATAGTCAGAGCAGTAGGTGTGAGGCAAATGGTTGTAATTTGAAGGCCATGGCTTTGAGTAGCTACTGTCACCCTCATATACTCTTCGATACCAAG CAGAAGCTCTACAAGGCCTGCACATTTGTCATCAGGAGTGCTTCGGCAGGACCAATAACCTGTGGGAAGCCTATACTGCAAACAACCATTCCTTGTCTGT GTACCGCCCACTTCCAGAAGGCTCAGCAGAATGTGACTCGTGCATTGAAGAAAGCCGGTCTTAACGTTGCTGCATCAAGTAAACTTGCTCCTAACTTTCA TGTCATAGTTGCAGAATATGTGAACCAAATTCAGGCCAAAAGAAGAGCTGCAAAAAGATCAAATTGA
AA sequence Show only first row Show all	>Lus10026896 pacid=23142855 polypeptide=Lus10026896 locus=Lus10026896.g ID=Lus10026896.BGIv1.0 annot-version=v1.0 MTAAAKHHRSQLPSTSKQPRNNPNPSTGAVALPAPPQTTNPNPTSSATAAVTSPITLFDRNHPLSHATLLTRHELLKRRSHHLKQLLQCYKDHYWALMEE VKVQHREYYWKYGVSPIKDDRKQQDPGENGNIAEVMDESTNFGSGVGGNLPWNYNNNSNSSKGEIELKNSQSSRCEANGCNLKAMALSSYCHPHILFDTK QKLYKACTFVIRSASAGPITCGKPILQTTIPCLCTAHFQKAQQNVTRALKKAGLNVAASSKLAPNFHVIVAEYVNQIQAKRRAAKRSN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31600			unknown protein		Lus10026896 [exp]	0	1
AT2G31600			unknown protein		Lus10003417 [exp]	1.0	0.8666
AT4G16280		FCA	RNA binding;abscisic acid bind...		Lus10006305 [exp]	18.3	0.8640
AT3G49430		SRP34A, SR34a, ...	Serine/Arginine-Rich Protein S...		Lus10015564 [exp]	19.0	0.8538
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10041646 [exp]	20.1	0.8344
					Lus10027730 [exp]	24.2	0.8649
AT5G14060		CARAB-AK-LYS	Aspartate kinase family protei...		Lus10012568 [exp]	26.0	0.8648
AT2G16940			Splicing factor, CC1-like (.1....		Lus10034466 [exp]	29.3	0.8494
AT5G43680			unknown protein		Lus10040152 [exp]	36.1	0.8174
AT1G20920			P-loop containing nucleoside t...		Lus10035328 [exp]	44.2	0.8195
AT1G73160			UDP-Glycosyltransferase superf...		Lus10014499 [exp]	47.3	0.8357

Compare expression of checked genes

Lus10026896 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.