Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020092 [exp] 207 / 2e-68 AT1G80450 86 / 5e-21 VQ motif-containing protein (.1) Lus10042423 [exp] 112 / 5e-31 AT1G80450 83 / 6e-20 VQ motif-containing protein (.1) Lus10026247 [exp] 112 / 1e-30 AT1G80450 83 / 5e-20 VQ motif-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G266700 [exp] 53 / 1e-08 AT1G80450 79 / 1e-18 VQ motif-containing protein (.1) Potri.018G016500 [exp] 52 / 3e-08 AT1G80450 67 / 6e-14 VQ motif-containing protein (.1) Potri.006G266600 [exp] 50 / 1e-07 AT1G80450 61 / 6e-12 VQ motif-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026897 pacid=23142889 polypeptide=Lus10026897 locus=Lus10026897.g ID=Lus10026897.BGIv1.0 annot-version=v1.0 ATGCATCCGGAGATGAGTACTCGCCGCCACGTGGTCGCGAATTCCAGCTCACTGCCGCCGATGTCTCCAGTCTCAACGACGATGTTCGTCCAAGCCGACG CGCGCCGCAGCCCCCCCCGCCGGGGCCGCGGGCTCCGCGGCCTTCTGACCCAGCCCTCGGGGGGAGCGGCGGCCGACTCCGACGCCAAGCTCCCGGTGAC TCACCCTTCAAGGACTCATCATCATCATGCTGCCAAACCCACCAATTATAATCTCATCAACAGCATCAATTCACCTCGCCGGTCGCCGTACAAGCTCCAA GAACGGCGGCAGACGGTCAGGAAGTTGGAAATCAAGCTGAGCCGAGCGAGTCTCCGTACCAGCAGCCCCTGTTCTTCACCTTACTACTCTCCCGTTGCTA GCCCGGTGACGCCACTGATGATGGGTTCGCCGTTTTTTTCGAGCAGTGCCGAGACATCACCGTCGCCGTCGACTGAGGAGGAGAGGGCAATAGCGGAGAA GAGGTTTTATTTGCACCCGTCTCCTCGGTTGATTACGCCACGGCGGGGGAATGTGGACCCGCCGGAGCTGCTTCCCCTGTTTCCTCTGACTTCCCCTTCT ACCGTAAATTGA
AA sequence Show only first row Show all	>Lus10026897 pacid=23142889 polypeptide=Lus10026897 locus=Lus10026897.g ID=Lus10026897.BGIv1.0 annot-version=v1.0 MHPEMSTRRHVVANSSSLPPMSPVSTTMFVQADARRSPPRRGRGLRGLLTQPSGGAAADSDAKLPVTHPSRTHHHHAAKPTNYNLINSINSPRRSPYKLQ ERRQTVRKLEIKLSRASLRTSSPCSSPYYSPVASPVTPLMMGSPFFSSSAETSPSPSTEEERAIAEKRFYLHPSPRLITPRRGNVDPPELLPLFPLTSPS TVN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80450			VQ motif-containing protein (....		Lus10026897 [exp]	0	1
AT2G39210			Major facilitator superfamily ...		Lus10037949 [exp]	2.4	0.6832
					Lus10002396 [exp]	7.1	0.6692
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Lus10025151 [exp]	22.2	0.6236
AT1G28270		RALFL4	ralf-like 4 (.1)		Lus10005541 [exp]	41.3	0.5244
AT2G45750			S-adenosyl-L-methionine-depend...		Lus10027432 [exp]	90.3	0.5274
					Lus10027052 [exp]	112.2	0.4922
AT2G07180			Protein kinase superfamily pro...		Lus10008546 [exp]	118.4	0.4460
AT3G60730			Plant invertase/pectin methyle...		Lus10028536 [exp]	131.8	0.5086
AT3G45290		ATMLO3, MLO3	MILDEW RESISTANCE LOCUS O 3, S...		Lus10011632 [exp]	143.7	0.4914
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Lus10009144 [exp]	198.0	0.4025

Compare expression of checked genes

Lus10026897 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.