Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25770 127 / 3e-38 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) AT4G32870 99 / 6e-27 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005477 [exp] 217 / 1e-73 AT2G25770 172 / 2e-55 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Lus10000573 [exp] 88 / 1e-22 AT4G32870 144 / 1e-44 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10006042 [exp] 76 / 3e-18 AT4G32870 145 / 3e-45 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10028262 [exp] 52 / 8e-09 AT2G25770 75 / 2e-17 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Lus10040227 [exp] 50 / 3e-08 AT2G25770 75 / 6e-17 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G046100 [exp] 147 / 3e-46 AT2G25770 188 / 1e-61 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Potri.006G236800 [exp] 96 / 2e-25 AT4G32870 179 / 1e-57 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.006G237000 [exp] 87 / 1e-22 AT4G32870 180 / 9e-59 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.006G237100 [exp] 87 / 2e-22 AT4G32870 178 / 8e-58 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.008G063900 [exp] 50 / 2e-08 AT4G32870 80 / 2e-19 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF10604 [flax] [poplar] Polyketide_cyc2 Polyketide cyclase / dehydrase and lipid transport
Representative CDS sequence Show only first row Show all	>Lus10026898 pacid=23142832 polypeptide=Lus10026898 locus=Lus10026898.g ID=Lus10026898.BGIv1.0 annot-version=v1.0 ATGGCAGAAGAAGCCCAACCCAACAACCACCCACTCCCCAAATGGAATGGAAAGGTCCCGGCAACCGTAAAGAGAGCCAGTGCCGACCAAATATGGACGC TCTTCACAGATTTCTTCAACATCCACAGATGGTTCTCAAACCTTCCATCCAGCTATATGGGAATCCACGACAGCAATGGCCAGCCGGGCTGCATCCGCTA CTGCTCGGGCTTCACCCTTCCCTCTACCCAGCTTCTTACCTGGTCCAAGGAAAGATTGAACGCCGTCGATCACTCCGAGATTGTCGACTGCAACATCGGA TTCAAGTCCTATGCATCGACGGTCCAGAATTTTCCGGATGATGATGATGACCAAGGATGTTTGATCGAGTGGGGGTTCACAGTAGATCCCGTGGAAGTTT TGTCTGACAATTACTGA
AA sequence Show only first row Show all	>Lus10026898 pacid=23142832 polypeptide=Lus10026898 locus=Lus10026898.g ID=Lus10026898.BGIv1.0 annot-version=v1.0 MAEEAQPNNHPLPKWNGKVPATVKRASADQIWTLFTDFFNIHRWFSNLPSSYMGIHDSNGQPGCIRYCSGFTLPSTQLLTWSKERLNAVDHSEIVDCNIG FKSYASTVQNFPDDDDDQGCLIEWGFTVDPVEVLSDNY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25770			Polyketide cyclase/dehydrase a...		Lus10026898 [exp]	0	1
AT4G25140		OLE1, OLEO1	oleosin 1 (.1)		Lus10027161 [exp]	6.1	0.6090
AT3G07200			RING/U-box superfamily protein...		Lus10018271 [exp]	13.7	0.5579
AT2G34440	MADS	AGL29	AGAMOUS-like 29 (.1)		Lus10011787 [exp]	16.7	0.5635
AT1G08580			unknown protein		Lus10000388 [exp]	21.4	0.5171
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10040325 [exp]	43.0	0.5056
AT3G13690			Protein kinase protein with ad...		Lus10009559 [exp]	43.4	0.5121
AT4G27570			UDP-Glycosyltransferase superf...		Lus10013367 [exp]	45.8	0.5111
AT1G17810		BETA-TIP	beta-tonoplast intrinsic prote...		Lus10040652 [exp]	46.6	0.5187
AT1G73190		ALPHA-TIP, TIP3...	ALPHA-TONOPLAST INTRINSIC PROT...		Lus10036187 [exp]	50.1	0.4842
AT1G07260		UGT71C3	UDP-glucosyl transferase 71C3 ...		Lus10010474 [exp]	51.8	0.5008

Compare expression of checked genes

Lus10026898 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.