Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24860 154 / 5e-49 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) AT3G47650 42 / 3e-05 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) AT5G17840 39 / 0.0005 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020093 [exp] 107 / 3e-29 AT2G24860 57 / 2e-10 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Lus10005719 [exp] 45 / 1e-06 AT3G47650 130 / 4e-40 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Lus10002906 [exp] 44 / 3e-06 AT3G47650 109 / 1e-31 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Lus10002040 [exp] 44 / 7e-06 AT1G75690 203 / 5e-68 LOW QUANTUM YIELD OF PHOTOSYSTEM II 1, DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Lus10019417 [exp] 43 / 2e-05 AT3G47650 128 / 2e-38 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Lus10030091 [exp] 42 / 3e-05 AT3G47650 129 / 3e-39 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G266800 [exp] 181 / 1e-59 AT2G24860 167 / 3e-54 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Potri.018G016400 [exp] 175 / 3e-57 AT2G24860 165 / 5e-53 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Potri.018G068300 [exp] 44 / 5e-06 AT3G47650 140 / 9e-44 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Potri.005G237800 [exp] 41 / 6e-05 AT1G75690 182 / 8e-60 LOW QUANTUM YIELD OF PHOTOSYSTEM II 1, DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Potri.018G028500 [exp] 40 / 0.0001 AT3G47650 120 / 4e-36 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Potri.013G066000 [exp] 39 / 0.0005 AT5G17840 145 / 4e-45 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Potri.002G023600 [exp] 39 / 0.0005 AT1G75690 193 / 4e-64 LOW QUANTUM YIELD OF PHOTOSYSTEM II 1, DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026899 pacid=23142959 polypeptide=Lus10026899 locus=Lus10026899.g ID=Lus10026899.BGIv1.0 annot-version=v1.0 ATGCCGTCGATTGGGCCTAAATCGCCGACCGCCACGACCATCTCCACACGTTCTTATGCCGGTCAATCACCAAGTTACCTACTCGGAAGCGCATTTACTG CAGCGGGGACGGTTTCATGTAGGGTTCTGAGAGTCAGGGCTTCTGCCGTGGATTCGCATGGGAACTCCTCTGATTTCACCAAACGTATGGAGCAGGCTTG GTCGATATCTAAGCAACCAAGGCCAGTGCCATGTACTTGTTGCGAGTCGAATGGCACCATTGAATGCCAATGGTGTAGAGGAACTGGTTTCTTCATTCTA GGTGATAACATGCTGTGTCAAGTCCCTTCTAGAAACACCACTTGTGTAATTTGTGCCGGCAAGGGATCCATGCGTTGCGGCGATTGCAAGGGAACTGGGT TTCGTGCAAAGTGGTTGGGAGAACCCACAGGTTCTAGCTAA
AA sequence Show only first row Show all	>Lus10026899 pacid=23142959 polypeptide=Lus10026899 locus=Lus10026899.g ID=Lus10026899.BGIv1.0 annot-version=v1.0 MPSIGPKSPTATTISTRSYAGQSPSYLLGSAFTAAGTVSCRVLRVRASAVDSHGNSSDFTKRMEQAWSISKQPRPVPCTCCESNGTIECQWCRGTGFFIL GDNMLCQVPSRNTTCVICAGKGSMRCGDCKGTGFRAKWLGEPTGSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24860			DnaJ/Hsp40 cysteine-rich domai...		Lus10026899 [exp]	0	1
AT1G32160			Protein of unknown function (D...		Lus10030993 [exp]	12.2	0.8692
AT1G77490		TAPX	thylakoidal ascorbate peroxida...		Lus10018155 [exp]	21.0	0.8505
AT5G03290		IDH-V	isocitrate dehydrogenase V (.1...		Lus10013806 [exp]	30.7	0.8468
AT1G32160			Protein of unknown function (D...		Lus10000084 [exp]	31.0	0.8160
AT1G78690			Phospholipid/glycerol acyltran...		Lus10004783 [exp]	31.9	0.8269
AT2G40090		ATATH9	ABC2 homolog 9 (.1)		Lus10040196 [exp]	43.0	0.8274
AT1G32500		ABCI7, ATNAP6	ATP-binding cassette I7, non-i...		Lus10017374 [exp]	50.3	0.8340
AT5G67020			unknown protein		Lus10019249 [exp]	60.6	0.8177
AT5G04830			Nuclear transport factor 2 (NT...		Lus10008971 [exp]	68.2	0.7831
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10006650 [exp]	75.8	0.7816

Compare expression of checked genes

Lus10026899 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.