Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24970 148 / 2e-46 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020094 [exp] 271 / 9e-95 AT2G24970 180 / 5e-59 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G016300 [exp] 187 / 2e-61 AT2G24970 197 / 1e-65 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026900 pacid=23142904 polypeptide=Lus10026900 locus=Lus10026900.g ID=Lus10026900.BGIv1.0 annot-version=v1.0 ATGGGGCATCGTCACCATCATGAGCATAACCAAGCGGCAGATGGCCTGGTCAATCTGTTGACGAAAGCTCACCATGATCTCGCAGCTGTTCAGTCTAAGC TCGAGAAGGAGTTTCAACAGACTTACCCAGACAACGCAAATCCGGTAAAGCTGGTTAACAGGATAAAGAAGGTACAAGAAGAAGTTACAGAGTTAATGGA TCGGTGCCGTGAGCTACTTGCTGCGAAGCAGGATTTGATTGATAAAGCTCGTGCAACTCTTTTGGGGAACAACAATGTGATAAATCGGATGCAAGTATCA ACTGGTATCCCTCCTACAAATGTTGAAGAGGATTCTGCATTTACCGACTTCAATCAGAGGTTCACTTTTGAGGACCTGCTGTCCAATAGTGGTGCTTCGT TGATGAGTTATGTCGATAATGCAGGAAATGACAGACATGATTCGGATGGTCAGGAGATCAACAAATTGCTCTTCTCAGCTATTGTGCAAAGCAACAACTA A
AA sequence Show only first row Show all	>Lus10026900 pacid=23142904 polypeptide=Lus10026900 locus=Lus10026900.g ID=Lus10026900.BGIv1.0 annot-version=v1.0 MGHRHHHEHNQAADGLVNLLTKAHHDLAAVQSKLEKEFQQTYPDNANPVKLVNRIKKVQEEVTELMDRCRELLAAKQDLIDKARATLLGNNNVINRMQVS TGIPPTNVEEDSAFTDFNQRFTFEDLLSNSGASLMSYVDNAGNDRHDSDGQEINKLLFSAIVQSNN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24970			unknown protein		Lus10026900 [exp]	0	1
AT5G34940		ATGUS3	glucuronidase 3 (.1.2.3)		Lus10001923 [exp]	5.0	0.8364
AT4G37280			MRG family protein (.1)		Lus10011511 [exp]	5.7	0.8167
AT4G17085			Putative membrane lipoprotein ...		Lus10029696 [exp]	6.9	0.8014
AT5G09250		KIWI	ssDNA-binding transcriptional ...		Lus10013733 [exp]	11.2	0.8143
AT1G03687			DTW domain-containing protein ...		Lus10018590 [exp]	11.6	0.7830
AT1G07950		MED22B	Surfeit locus protein 5 subuni...		Lus10023466 [exp]	11.8	0.8090
AT3G02680		ATNBS1, NBS1	nijmegen breakage syndrome 1 (...		Lus10007365 [exp]	15.4	0.8041
AT4G17085			Putative membrane lipoprotein ...		Lus10042735 [exp]	15.7	0.7540
AT2G45280		ATRAD51C	RAS associated with diabetes p...		Lus10000790 [exp]	18.0	0.7799
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Lus10005340 [exp]	18.2	0.7980

Compare expression of checked genes

Lus10026900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.