Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24830 424 / 2e-144 C3HZnF zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein (.1) AT3G09850 49 / 1e-05 D111/G-patch domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020095 [exp] 832 / 0 AT2G24830 471 / 8e-163 zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein (.1) Lus10019584 [exp] 55 / 1e-07 AT3G09850 378 / 7e-120 D111/G-patch domain-containing protein (.1) Lus10036327 [exp] 53 / 6e-07 AT3G09850 468 / 8e-154 D111/G-patch domain-containing protein (.1) Lus10002252 [exp] 49 / 7e-06 AT1G17070 622 / 0.0 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1) Lus10000930 [exp] 49 / 9e-06 AT1G17070 895 / 0.0 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G016200 [exp] 505 / 5e-176 AT2G24830 421 / 1e-143 zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein (.1) Potri.006G189501 [exp] 56 / 7e-08 AT3G09850 436 / 1e-142 D111/G-patch domain-containing protein (.1) Potri.018G113600 [exp] 55 / 8e-08 AT3G09850 524 / 3e-176 D111/G-patch domain-containing protein (.1) Potri.019G043200 [exp] 46 / 7e-05 AT1G17070 794 / 0.0 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0449 [flax] [poplar] G-PATCH PF01585 [flax] [poplar] G-patch G-patch domain
Representative CDS sequence Show only first row Show all	>Lus10026901 pacid=23142847 polypeptide=Lus10026901 locus=Lus10026901.g ID=Lus10026901.BGIv1.0 annot-version=v1.0 ATGGCGAACGAGGACGAAGAGAAAGCTCTGGAGAATCAGCTAGAAGAGCAGTTACATGAACTGAGAGACTCCCTTGCTGATCTTGACGACGCTCTTTCTT CTGATGCTTCCAATTCTGAGCTGCTCTCTGTTCAGGAGGAGCTTGTTCAGTCGATCAAAGAAGCGGAGGATGGGCTTCTTCACCTTAAACGTGCTCGGTT GTTAAGGCAAGTGGATGTAGCAGCAGCAGCACTTCAGAGCTCCAGTCGCATTCCCAACGATGTTGAAGTGGTGCATATTGAAGATACAGACGGTGAAGCA ACACTCCAGAGTTCCAAGGGTGATGTTGAAGTGGTGCACATTGATGATACAGATGGAGAAGCAGAACCAGTGGAGGACACCGATGGATTTTCTGTTGGAT CCAAATGTAGGTTCCGTTCTGCTGATGGGCGGTGGTATAGCGGAAAGATTATAGGGTTTGAAGGTTCTGATGTTGCAAAGATATCTTTCCTCACACCTAC TTCGGATAACATGCTGATGTGCAAGTTTTTCCGGCAACAACGATGTCGATTTGGTACTGGTTGCCGCATGTCCCATGGGGTTGATGTGCCATTGTCTTCC CTGAGGGAGTATGTTCCAACAGTCTGGGATCAGTCATTTGTGGGTTCCAGCATTTTTGCAATAGCTAACCGAAGTGTTGGAATTTGGAGAGAAGCTGAGC TCCAATCTTGGGATAATGAACTCGGGATGGGAAAGGTTGTTTTCCGTGATGAAGGGAGCTCTGCTAAGCTTCAGCCTGAAGATATGTCATTATCTGATTA TGGAGTAGTCAGCGAGGAAGAAGATGGTTGTGATACAAGCTCAGAACAATCCGATTCAAGTGATCGTGAAGAAGAAGAAGAAAGCCCCGGAGGCTTGGGA TTTCTTGGGAGCACCAACCAACAAAGAGGTATCCAAAAGGAAACTGCGATATTCGCAAAGTGGGAGAATCATACCAGGGGTATAGCTTCCAAGATGATGG CAAATATGGGTTACCGTGAAGGAATGGGTTTAGGCGCATCGGGGCAAGGAATGGTGAATCCAATTCCCGTGAAGGTCCTTCCGGCTAAGCAATCACTTGA TCACGCTTTAGAATCTCAAAGAGGAGGTGAACAGAGCAACAAGGAAAGTCATGGAAAGAAGCGAAGCAGAGGTGGGAAGAGAAAACGTGAGAAGAAGTTT GCTGAGGCAGCTAGGGCAGCAAAGGCCTCGGCGAAGAATCAAGAAGAAACTAGACCAGACGTCTTCAGCTTCATTAATGACCAACTCGCAATGCACAACG GTGGGTCGGCCAAGAAGGAACAGAGAAAAGGTTCAGGGGAGAAGAAAATGGACAGACGAGCTCTGGTTGCTCATGAAGACGAGATGAATGATTTGAGAAT ACAAGTAGATCGGCTGGAGGAGATGGCAAATAGAAACAGGAAGGAGAAGTTAGTTTATGAAGCCACCATGAGAAGGTTAAACGAAGCTCGGAAAGCCTTG GAAGACGCTCAGGCTACTCATGCTTCTGCTACTTTTGCTATTGTTAGCAAAGAGCAAGAGAAGAAATGGCTCAAGTTTTGA
AA sequence Show only first row Show all	>Lus10026901 pacid=23142847 polypeptide=Lus10026901 locus=Lus10026901.g ID=Lus10026901.BGIv1.0 annot-version=v1.0 MANEDEEKALENQLEEQLHELRDSLADLDDALSSDASNSELLSVQEELVQSIKEAEDGLLHLKRARLLRQVDVAAAALQSSSRIPNDVEVVHIEDTDGEA TLQSSKGDVEVVHIDDTDGEAEPVEDTDGFSVGSKCRFRSADGRWYSGKIIGFEGSDVAKISFLTPTSDNMLMCKFFRQQRCRFGTGCRMSHGVDVPLSS LREYVPTVWDQSFVGSSIFAIANRSVGIWREAELQSWDNELGMGKVVFRDEGSSAKLQPEDMSLSDYGVVSEEEDGCDTSSEQSDSSDREEEEESPGGLG FLGSTNQQRGIQKETAIFAKWENHTRGIASKMMANMGYREGMGLGASGQGMVNPIPVKVLPAKQSLDHALESQRGGEQSNKESHGKKRSRGGKRKREKKF AEAARAAKASAKNQEETRPDVFSFINDQLAMHNGGSAKKEQRKGSGEKKMDRRALVAHEDEMNDLRIQVDRLEEMANRNRKEKLVYEATMRRLNEARKAL EDAQATHASATFAIVSKEQEKKWLKF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24830	C3HZnF		zinc finger (CCCH-type) family...		Lus10026901 [exp]	0	1
AT3G18760			Translation elongation factor...		Lus10006729 [exp]	8.6	0.8381
AT5G40080			Mitochondrial ribosomal protei...		Lus10034241 [exp]	9.9	0.7350
AT5G50810		TIM8	translocase inner membrane sub...		Lus10022450 [exp]	10.0	0.8422
AT1G50170		ATSIRB	sirohydrochlorin ferrochelatas...		Lus10022245 [exp]	11.2	0.6880
AT1G20650		ASG5	ALTERED SEED GERMINATION 5, Pr...		Lus10030741 [exp]	12.2	0.7648
AT5G26110			Protein kinase superfamily pro...		Lus10006903 [exp]	15.5	0.7497
AT5G56670			Ribosomal protein S30 family p...		Lus10017473 [exp]	17.2	0.8266
AT1G18800		NRP2	NAP1-related protein 2 (.1)		Lus10024229 [exp]	18.5	0.7496
AT2G04865			Aminotransferase-like, plant m...		Lus10012346 [exp]	18.8	0.7158
AT4G19150			Ankyrin repeat family protein ...		Lus10001048 [exp]	20.2	0.7736

Compare expression of checked genes

Lus10026901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.