Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31770 551 / 0 ATDBR1 ARABIDOPSIS THALIANA DEBRANCHING ENZYME 1, debranching enzyme 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020096 [exp] 810 / 0 AT4G31770 561 / 0.0 ARABIDOPSIS THALIANA DEBRANCHING ENZYME 1, debranching enzyme 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G015300 [exp] 613 / 0 AT4G31770 546 / 0.0 ARABIDOPSIS THALIANA DEBRANCHING ENZYME 1, debranching enzyme 1 (.1) Potri.006G152100 [exp] 44 / 0.0002 AT5G56900 852 / 0.0 CwfJ-like family protein / zinc finger (CCCH-type) family protein (.1), CwfJ-like family protein / zinc finger (CCCH-type) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase CL0163 [flax] [poplar] PF05011 [flax] [poplar] DBR1 Lariat debranching enzyme, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10026902 pacid=23142932 polypeptide=Lus10026902 locus=Lus10026902.g ID=Lus10026902.BGIv1.0 annot-version=v1.0 ATGAAGATAGCCGTGGAAGGCTGTATGCATGGCGATCTGGAGACAGTTTACCAGACACTCCAGCACCTCGAGAAGTTGCACGATACCAAAATCGACCTTC TCCTTTGCTGCGGCGATTTTCAGGCGGTGAGGAACGAGAGAGATCTGCAGAGCCTGAATGTGCCGCCCAAATATCGAGATATGAAGTCTTTCTGGAAGTA CTACTCCGGCCAGGAGGTCGCTCCCATTCCTACGATTTTCATCGGTGGAAATCATGAAGCTTCCAATTACTTGTGGGAACTATATTATGGAGGATGGGCA GCTCCTAACATTTTCTTTATGGGCTTGTCTGGAGTGGTCAAGTTTGGTAACATTCGTATAGGTGGCCTTTCTGGGATTTACAATGCCAGGGACTATCATA GAGGGCATGATGAGAGGCCACCGTACAATGAAAATTCTATAAGATCCATTTACCATGTTCGTGAATATGATGTACATAAGCTCATGCAAGTAGAAGAACC AATTGACATCTTCCTTTCACACGATTGGCCTCTTGGCATCACTGATTGTGGTGATTGGCAGCAACTTGTTCGTTTCAAACCATTCTTTGAAGCAGAGATA AAGGAAAGGACCCTTGGAAGCAAAGCTGCTGCTGAGCTATTAGAAAAGTTGAGACCCCCCTATTGGTTTTCTGCTCACTTGCACTGCAAATTCGCTGCCC TTGTCAATCATGGATCAAGCGGCAAGACAACTAAATTTCTTGCACTCGATAAATGTCTACCAAAGAGAAGATTCTTACAGATTATTGACATAGAGTCAAA TCCAGGACCTTTTGAGATCCAGTATGATGAGGAATGGCTAGCAATAACCAGGAAATTTAACTATATTTTTCCATTGACATATAAAAATCCTAACTTTAGG GATACGACATTGGAGATCCAAGATTGTCGTGAATTGGTCAAGAACAAACTACAAGCTAGAGGAGCTAAAACGTTTGAATTTGCTCGTACTGTTCCTGCTT TTGATCCCAGTCAATCTAAAGTAAAGGGCTCCCCCGGTGGTGATGATTGTCCTAGGAATCCCCAAACAGAGTCTTTCATGCAGCTTTTGGAGCTACCATA TCTGCTAGACAGTGGATGCAAACATAAAGGAAGCGTTAATGATGACACGACTGGTGTAGTGATCCGTAAAGGTCCTTACGTTGATGATCCTGAAGAGATA CCTCTAGATGATGCTGATGATACCGATGGGGACCCAGGAACTTCAGATGAATAG
AA sequence Show only first row Show all	>Lus10026902 pacid=23142932 polypeptide=Lus10026902 locus=Lus10026902.g ID=Lus10026902.BGIv1.0 annot-version=v1.0 MKIAVEGCMHGDLETVYQTLQHLEKLHDTKIDLLLCCGDFQAVRNERDLQSLNVPPKYRDMKSFWKYYSGQEVAPIPTIFIGGNHEASNYLWELYYGGWA APNIFFMGLSGVVKFGNIRIGGLSGIYNARDYHRGHDERPPYNENSIRSIYHVREYDVHKLMQVEEPIDIFLSHDWPLGITDCGDWQQLVRFKPFFEAEI KERTLGSKAAAELLEKLRPPYWFSAHLHCKFAALVNHGSSGKTTKFLALDKCLPKRRFLQIIDIESNPGPFEIQYDEEWLAITRKFNYIFPLTYKNPNFR DTTLEIQDCRELVKNKLQARGAKTFEFARTVPAFDPSQSKVKGSPGGDDCPRNPQTESFMQLLELPYLLDSGCKHKGSVNDDTTGVVIRKGPYVDDPEEI PLDDADDTDGDPGTSDE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31770		ATDBR1	ARABIDOPSIS THALIANA DEBRANCHI...		Lus10026902 [exp]	0	1
					Lus10036475 [exp]	2.0	0.8228
AT4G33140			Haloacid dehalogenase-like hyd...		Lus10027652 [exp]	2.0	0.7492
					Lus10010342 [exp]	6.2	0.8101
AT1G72320		APUM23	pumilio 23 (.1.2.3)		Lus10022388 [exp]	6.9	0.7854
AT1G04010		ATPSAT1	phospholipid sterol acyl trans...		Lus10008234 [exp]	19.9	0.7293
AT2G32000			DNA topoisomerase, type IA, co...		Lus10035035 [exp]	23.2	0.7383
AT5G60040		NRPC1	nuclear RNA polymerase C1 (.1....		Lus10013536 [exp]	27.5	0.6954
AT5G25060			RNA recognition motif (RRM)-co...		Lus10042420 [exp]	33.8	0.7447
AT5G18910			Protein kinase superfamily pro...		Lus10012776 [exp]	34.1	0.6569
AT3G09850			D111/G-patch domain-containing...		Lus10019584 [exp]	34.3	0.7381

Compare expression of checked genes

Lus10026902 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.