Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24800 419 / 8e-148 Peroxidase superfamily protein (.1) AT4G31760 403 / 3e-141 Peroxidase superfamily protein (.1) AT5G51890 252 / 3e-82 Peroxidase superfamily protein (.1) AT5G14130 245 / 2e-79 Peroxidase superfamily protein (.1) AT1G05260 241 / 5e-78 RCI3A, RCI3 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) AT3G21770 239 / 4e-77 Peroxidase superfamily protein (.1) AT5G42180 235 / 1e-75 PER64 peroxidase 64, Peroxidase superfamily protein (.1) AT5G64120 235 / 2e-75 Peroxidase superfamily protein (.1) AT5G66390 233 / 2e-74 Peroxidase superfamily protein (.1) AT1G77100 231 / 5e-74 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020097 [exp] 618 / 0 AT2G24800 412 / 3e-145 Peroxidase superfamily protein (.1) Lus10027405 [exp] 246 / 6e-80 AT5G51890 448 / 2e-159 Peroxidase superfamily protein (.1) Lus10005614 [exp] 246 / 1e-79 AT5G42180 461 / 6e-165 peroxidase 64, Peroxidase superfamily protein (.1) Lus10017288 [exp] 246 / 1e-79 AT5G42180 462 / 4e-165 peroxidase 64, Peroxidase superfamily protein (.1) Lus10031664 [exp] 245 / 3e-79 AT5G51890 453 / 1e-161 Peroxidase superfamily protein (.1) Lus10032926 [exp] 244 / 3e-79 AT1G05260 292 / 5e-98 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10034547 [exp] 243 / 2e-78 AT5G42180 471 / 7e-169 peroxidase 64, Peroxidase superfamily protein (.1) Lus10042144 [exp] 238 / 2e-76 AT1G24110 390 / 2e-136 Peroxidase superfamily protein (.1) Lus10015127 [exp] 237 / 2e-76 AT1G05260 444 / 7e-158 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G015500 [exp] 470 / 9e-168 AT2G24800 416 / 2e-146 Peroxidase superfamily protein (.1) Potri.006G267400 [exp] 460 / 2e-163 AT2G24800 409 / 1e-143 Peroxidase superfamily protein (.1) Potri.007G074700 [exp] 245 / 2e-79 AT5G47000 358 / 8e-124 Peroxidase superfamily protein (.1) Potri.017G037900 [exp] 243 / 8e-79 AT1G05260 481 / 2e-172 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.019G063201 [exp] 239 / 3e-77 AT3G01190 412 / 4e-145 Peroxidase superfamily protein (.1) Potri.017G064100 [exp] 238 / 6e-77 AT5G67400 372 / 2e-129 root hair specific 19 (.1) Potri.017G038100 [exp] 237 / 2e-76 AT1G05260 479 / 7e-172 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.012G042800 [exp] 237 / 2e-76 AT1G05260 336 / 2e-115 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.005G108900 [exp] 234 / 2e-75 AT5G42180 442 / 2e-157 peroxidase 64, Peroxidase superfamily protein (.1) Potri.002G018000 [exp] 234 / 3e-75 AT5G42180 483 / 1e-173 peroxidase 64, Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10026903 pacid=23142887 polypeptide=Lus10026903 locus=Lus10026903.g ID=Lus10026903.BGIv1.0 annot-version=v1.0 ATGGATTCTTCAGCAACCTCACCACTTCCTCTTCTGCTCCTTATTCTCATTCTCCCCAACTCTTCTTCTGCGACACTGTCCTTTGACTTCTACTCATCCT CCTGCCCTGCCGTCAACTTGATTGTATCCAACACAGTCAGGACAGCTTCCTCCGACGACCCATCTATCCCCGGGAAGCTCCTCCGCTTGCTCTTCCATGA CTGCTTCGTCGACGGTTGCGATGGATCTGTGCTTCTAGAAGGGAACTCGACGGAGAGGAGTGACCCGGCCAATGGGTCGCTGGGAGGGTTCGAAGTGATC GATTCGGCGAAGAGGGTGCTGGAGGTGTTCTGTCCTGGCATTGTATCTTGTGCTGATATTCTGGCTCTGGCTGCTAGAGATGCTGTTGTAATCTCTGGAG GACCGGATACTCAAATTCCAATGGGGAGAAGAGATGGGTTGGTTTCGTCTGTATTGAATGTTAGACCAAACATTGTGGACACTAGCTTCACCATGCCTGA AATGGTCAAGATCTTCTCCTCCAAAGGTCTCTCTCTGGATGACCTCGTCGTTTTATCTGGAGCTCACACAATAGGATCAGCCCATTGCGGAGCATTCAGC GACCGATTCCACACAGATCCAAAAGGGAAACTGAATGTGATCGATTCCTCACTGGACGCTAACTACGCAAAGGACTTGATCCAGAAATGCCCAGCCGGAG CAAATAACCCGTCGGTAACAGTTGCGAACGACCCGGAAACATCTTCAGTGTTCGACAACCAGTACTACAGGAACCTGTTGGGACACAAGGGTCTGTTCCA GTCAGATTCCGTGCTGCTGGAGGACAAACAGACGAGTAAATTGGTGCGAGATTTGGCGGCGGATGAGGAGGCATTTTTCGAGAGGTGGAGCGAGTCCTTC GTGAAGCTTACTAGTGTTGGTGTGAAGACCGGCGAGGAAGAAGGAGAAATTCGAGCTTCTTGTTCCGTTACTAATAGTAATATGAATAGGAAGAAGTGA
AA sequence Show only first row Show all	>Lus10026903 pacid=23142887 polypeptide=Lus10026903 locus=Lus10026903.g ID=Lus10026903.BGIv1.0 annot-version=v1.0 MDSSATSPLPLLLLILILPNSSSATLSFDFYSSSCPAVNLIVSNTVRTASSDDPSIPGKLLRLLFHDCFVDGCDGSVLLEGNSTERSDPANGSLGGFEVI DSAKRVLEVFCPGIVSCADILALAARDAVVISGGPDTQIPMGRRDGLVSSVLNVRPNIVDTSFTMPEMVKIFSSKGLSLDDLVVLSGAHTIGSAHCGAFS DRFHTDPKGKLNVIDSSLDANYAKDLIQKCPAGANNPSVTVANDPETSSVFDNQYYRNLLGHKGLFQSDSVLLEDKQTSKLVRDLAADEEAFFERWSESF VKLTSVGVKTGEEEGEIRASCSVTNSNMNRKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24800			Peroxidase superfamily protein...		Lus10026903 [exp]	0	1
					Lus10011890 [exp]	1.0	0.9321
AT1G11000		ATMLO4, MLO4	MILDEW RESISTANCE LOCUS O 4, S...		Lus10041893 [exp]	2.0	0.9257
					Lus10022823 [exp]	2.4	0.9230
AT5G63900			Acyl-CoA N-acyltransferase wit...		Lus10000368 [exp]	4.9	0.9144
AT4G19420			Pectinacetylesterase family pr...		Lus10034766 [exp]	5.2	0.8954
AT4G31690	B3	REM9	Transcriptional factor B3 fami...		Lus10042406 [exp]	6.6	0.8930
AT2G27385			Pollen Ole e 1 allergen and ex...		Lus10020642 [exp]	6.7	0.9069
AT1G05230	HD	HDG2	homeodomain GLABROUS 2 (.1.2.3...		Lus10039667 [exp]	6.9	0.9014
AT1G02205		CER1	ECERIFERUM 1, Fatty acid hydro...		Lus10011473 [exp]	7.1	0.8939
AT1G12330			unknown protein		Lus10024559 [exp]	8.0	0.8727

Compare expression of checked genes

Lus10026903 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.