Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27640 1097 / 0 ATTIF3B1, ATEIF3B-1, EIF3B-1, TIF3B1 EUKARYOTIC TRANSLATION INITIATION FACTOR 3B1, EUKARYOTIC TRANSLATION INITIATION FACTOR 3B, ARABIDOPSIS THALIANA TRANSLATION INITIATION FACTOR 3B1, translation initiation factor 3B1 (.1.2) AT5G25780 1070 / 0 ATEIF3B-2, EIF3B-2 eukaryotic translation initiation factor 3B-2 (.1) AT1G49015 210 / 3e-63 DPP6 N-terminal domain-like protein (.1) AT1G73180 97 / 8e-21 Eukaryotic translation initiation factor eIF2A family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020098 [exp] 1271 / 0 AT5G27640 1108 / 0.0 EUKARYOTIC TRANSLATION INITIATION FACTOR 3B1, EUKARYOTIC TRANSLATION INITIATION FACTOR 3B, ARABIDOPSIS THALIANA TRANSLATION INITIATION FACTOR 3B1, translation initiation factor 3B1 (.1.2) Lus10016562 [exp] 1212 / 0 AT5G27640 1072 / 0.0 EUKARYOTIC TRANSLATION INITIATION FACTOR 3B1, EUKARYOTIC TRANSLATION INITIATION FACTOR 3B, ARABIDOPSIS THALIANA TRANSLATION INITIATION FACTOR 3B1, translation initiation factor 3B1 (.1.2) Lus10040831 [exp] 806 / 0 AT5G27640 697 / 0.0 EUKARYOTIC TRANSLATION INITIATION FACTOR 3B1, EUKARYOTIC TRANSLATION INITIATION FACTOR 3B, ARABIDOPSIS THALIANA TRANSLATION INITIATION FACTOR 3B1, translation initiation factor 3B1 (.1.2) Lus10004803 [exp] 82 / 4e-16 AT1G73180 623 / 0.0 Eukaryotic translation initiation factor eIF2A family protein (.1.2) Lus10038840 [exp] 44 / 0.0001 AT3G16380 62 / 2e-11 poly(A) binding protein 6 (.1) Lus10021720 [exp] 44 / 0.0006 AT3G42660 1069 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10034648 [exp] 44 / 0.0007 AT3G42660 1083 / 0.0 transducin family protein / WD-40 repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G015200 [exp] 1176 / 0 AT5G27640 1168 / 0.0 EUKARYOTIC TRANSLATION INITIATION FACTOR 3B1, EUKARYOTIC TRANSLATION INITIATION FACTOR 3B, ARABIDOPSIS THALIANA TRANSLATION INITIATION FACTOR 3B1, translation initiation factor 3B1 (.1.2) Potri.006G267500 [exp] 1167 / 0 AT5G27640 1087 / 0.0 EUKARYOTIC TRANSLATION INITIATION FACTOR 3B1, EUKARYOTIC TRANSLATION INITIATION FACTOR 3B, ARABIDOPSIS THALIANA TRANSLATION INITIATION FACTOR 3B1, translation initiation factor 3B1 (.1.2) Potri.013G126300 [exp] 85 / 5e-17 AT1G73180 703 / 0.0 Eukaryotic translation initiation factor eIF2A family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF08662 [flax] [poplar] eIF2A Eukaryotic translation initiation factor eIF2A CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10026904 pacid=23142942 polypeptide=Lus10026904 locus=Lus10026904.g ID=Lus10026904.BGIv1.0 annot-version=v1.0 ATGGCGGACGTTATGGGCGCGAAGGACATAGGGGCTGTGGCGGCGGAGGTTGGAATCGACCTTTCACAGGTTGATTTTGACTCAATCCAGCTGCCGGCCG GCGAAGATTTCGGCATCCTCAGCGATGACGATGACATCCTCCAAGAGGAGCAGCTAGATTTCGATTCTGGCTTTGGAAACATCATTGTGGTGGATAATCT TCCTGTTGTTCCATTTGAGAAATTCGAGAAGCTCGAGGGAGTTATCAGGAAGATCTTTTCCCAAACTGGGGTTATTAAGGAGGATGGTCTCTGGATGCCA CTTGATCCTGAGACCAAGAAAACTAATGGTTACTGCTTCATTGAATACAACACTCCTCAGGAAGCTGAGCTTGCTAAAGAGAAAACCAATGGATACAGGC TTGACAAGTCCCATTTTTTTGTTGTCAATATGTTTGATGACTTTGATAAGTACATGAGAGTACCGGATGAATGGGCAGCTCCTGAGGTTAAGCCATACGT TCCTGGGGAAAACCTACAGCATTGGCTAACCGATGAAAAGGCTAGGGATCAGTTTGTGATCCGTGCAGGCACTGATACTGAGGTGTTCTGGAATGATACT AGACATTTGAAGCCCGACCCTGTCTACAAGCGGGCTTACTGGACAGAGAGCTTTGTTCAGTGGTCTCCACTTGGAACTTACCTTGCAACAGTTCATAGGC AAGGGGCAGCTGTGTGGGGCGGTGCATCTACCTTCAACCGTCTTATGCGCTATGCTCATCCTCAGGTTAAAATGATTGACTTCTCCCCAGGTGAGAAATA CCTGGTAACCTACAGTAGTCATGAACCAAGCAATCCACGTGATGCAAATAGGGTTCTGATCAATATATTTGATGTGAGGACCGGCAAGGTTAGAAGAGAT TTTAAAGGAAGTGCTGATGAATTTACAGCTGGAGGAGCTGGTGGTGTCACAGGTGTTCCATGGCCAGTTTTCCGCTGGGGTGGCGGAAAGGGTGATAACT ACTTTGCAAAATTGGGGAAAAATATGATATCTGTCTATGAAACAGAGACTTTCAGTCTCATTGATAAGAAATCCATAAAGGTTGAGAACGTTGTGGACTT CACTTGGTCTCCAGCCGATCCAATTATTGCACTCTTCGTCCCTGAGCTTGGTGGTGGTAACCAGCCGGCTAGGGTGAGTCTTGTTCAAATTCCCAGCAAA CAGGAACTGAGACAGAAGAATCTTTTCAGTGTCAGCGACTGCAAAATGTACTGGCAAAGTGCTGGGGACTATCTTGCTGTACAGGTGGATCGGTACACCA AGACCAAGAAAAGCACATATACAGGCTTTGAGCTTTTCAGAATTAAAGAACGTGATATTCCCATTGAGGTTCTGGAGCTTGAAAATAAAAATGACAAGAT CATTGCTTTTGCCTGGGAGCCAAAGGGGCACAGGTTTGCTGTTATTCATGGTGATGGTCCAAGGCCTGATGTAAGCTTTTACTCAATGAAGACTGCTCAG CACTCTGGCCGGGTGTCCAAGCTCACTACCCTGAAAGGAAAGCAAGCAAATGCTCTTTTCTGGTCTCCTTTGGGACATTACTTAATACTGGCAGGAATGA AGGGTTTCAATGGCCAACTGGAATTCTACAATGTTGATGAGCTTGAAACTATGGCAACTGCTGAGCACTTTATGGCGACTGATGTAGAATGGGATCCTAC TGGAAGGTATGTGGCAACAGCAGTCACTTCAGTTCACCATGAGATGGAGAATGGGTTCAATATCTGGTCCTTCCACGGAAAGCAACTCTATAGGATATCG AAGGATCATTTCTTCCAGGCAAGTCTCTATATACCGTTACTGAGTTGTTCCTTTCAATGGCGCCCAAGGCCACCTTCCTTCTTGAGTGCGGAAAAGGAGG AAGAGATTGCAAAGAACTTGAAGAAGTACAGCAAGAAGTATGAGGCAGAGGACCAGGATGTGTCGTTGCAATTGAGCGAGCAAGATAGAGAGAAGAGGAA ACTGCTCAAGGACGAATGGGCCCAATGGGTGAGCAAATGGAAGAAGATGCATGAAGAGGAGAAGTTGGAGAGACAGCACTTGAGGGACGGAGAGGCCAGC GACGAAGAAGAGGTGTATGAAGCCAAGGAAGTTGAAGTCGAGGAAGTGTTGGATGTCTCAGAGGAAGTGGTTTCATTCGAATACGGCCAGGAGTAG
AA sequence Show only first row Show all	>Lus10026904 pacid=23142942 polypeptide=Lus10026904 locus=Lus10026904.g ID=Lus10026904.BGIv1.0 annot-version=v1.0 MADVMGAKDIGAVAAEVGIDLSQVDFDSIQLPAGEDFGILSDDDDILQEEQLDFDSGFGNIIVVDNLPVVPFEKFEKLEGVIRKIFSQTGVIKEDGLWMP LDPETKKTNGYCFIEYNTPQEAELAKEKTNGYRLDKSHFFVVNMFDDFDKYMRVPDEWAAPEVKPYVPGENLQHWLTDEKARDQFVIRAGTDTEVFWNDT RHLKPDPVYKRAYWTESFVQWSPLGTYLATVHRQGAAVWGGASTFNRLMRYAHPQVKMIDFSPGEKYLVTYSSHEPSNPRDANRVLINIFDVRTGKVRRD FKGSADEFTAGGAGGVTGVPWPVFRWGGGKGDNYFAKLGKNMISVYETETFSLIDKKSIKVENVVDFTWSPADPIIALFVPELGGGNQPARVSLVQIPSK QELRQKNLFSVSDCKMYWQSAGDYLAVQVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDGPRPDVSFYSMKTAQ HSGRVSKLTTLKGKQANALFWSPLGHYLILAGMKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHHEMENGFNIWSFHGKQLYRIS KDHFFQASLYIPLLSCSFQWRPRPPSFLSAEKEEEIAKNLKKYSKKYEAEDQDVSLQLSEQDREKRKLLKDEWAQWVSKWKKMHEEEKLERQHLRDGEAS DEEEVYEAKEVEVEEVLDVSEEVVSFEYGQE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27640		ATTIF3B1, ATEIF...	EUKARYOTIC TRANSLATION INITIAT...		Lus10026904 [exp]	0	1
AT1G09640			Translation elongation factor ...		Lus10002537 [exp]	3.7	0.9555
AT3G20050		ATTCP-1	T-complex protein 1 alpha subu...		Lus10042966 [exp]	4.0	0.9545
AT3G09630			Ribosomal protein L4/L1 family...		Lus10019903 [exp]	6.5	0.9440
AT3G20330		PYRB	PYRIMIDINE B (.1)		Lus10013346 [exp]	6.9	0.9455
AT3G25860		PLE2, LTA2	PLASTID E2 SUBUNIT OF PYRUVATE...		Lus10034304 [exp]	11.0	0.9439
AT3G51800		ATEBP1, ATG2, E...	A. THALIANA ERBB-3 BINDING PRO...		Lus10027818 [exp]	11.5	0.9445
AT5G60990			DEA(D/H)-box RNA helicase fami...		Lus10031182 [exp]	12.0	0.9320
AT1G09640			Translation elongation factor ...		Lus10007148 [exp]	12.4	0.9446
AT4G21130		EMB2271	EMBRYO DEFECTIVE 2271, Transdu...		Lus10023255 [exp]	13.4	0.9390
AT4G02930			GTP binding Elongation factor ...		Lus10027995 [exp]	13.4	0.9454

Compare expression of checked genes

Lus10026904 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.