Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10770 81 / 1e-18 Eukaryotic aspartyl protease family protein (.1) AT1G79720 80 / 3e-18 Eukaryotic aspartyl protease family protein (.1) AT5G10760 78 / 2e-17 Eukaryotic aspartyl protease family protein (.1) AT2G03200 75 / 2e-16 Eukaryotic aspartyl protease family protein (.1) AT1G01300 72 / 3e-15 Eukaryotic aspartyl protease family protein (.1) AT3G20015 71 / 4e-15 Eukaryotic aspartyl protease family protein (.1) AT2G42980 71 / 9e-15 Eukaryotic aspartyl protease family protein (.1) AT3G61820 67 / 1e-13 Eukaryotic aspartyl protease family protein (.1) AT1G25510 66 / 2e-13 Eukaryotic aspartyl protease family protein (.1) AT3G59080 61 / 1e-11 Eukaryotic aspartyl protease family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000265 [exp] 313 / 3e-108 AT5G10770 173 / 3e-49 Eukaryotic aspartyl protease family protein (.1) Lus10020099 [exp] 224 / 5e-73 AT5G10770 149 / 4e-40 Eukaryotic aspartyl protease family protein (.1) Lus10020100 [exp] 100 / 9e-26 AT5G10770 190 / 7e-56 Eukaryotic aspartyl protease family protein (.1) Lus10026906 [exp] 94 / 3e-23 AT5G10760 182 / 9e-53 Eukaryotic aspartyl protease family protein (.1) Lus10024098 [exp] 84 / 1e-19 AT1G79720 399 / 4e-136 Eukaryotic aspartyl protease family protein (.1) Lus10042426 [exp] 79 / 8e-18 AT5G10770 553 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041621 [exp] 78 / 3e-17 AT1G79720 510 / 1e-178 Eukaryotic aspartyl protease family protein (.1) Lus10042427 [exp] 75 / 2e-16 AT5G10770 476 / 7e-165 Eukaryotic aspartyl protease family protein (.1) Lus10003999 [exp] 74 / 7e-16 AT1G01300 636 / 0.0 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G185175 [exp] 89 / 4e-21 AT1G79720 523 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.018G014800 [exp] 85 / 8e-20 AT5G10770 312 / 9e-102 Eukaryotic aspartyl protease family protein (.1) Potri.001G041700 [exp] 85 / 1e-19 AT1G79720 521 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G232600 [exp] 82 / 6e-19 AT5G10770 438 / 1e-150 Eukaryotic aspartyl protease family protein (.1) Potri.006G232500 [exp] 82 / 8e-19 AT5G10770 334 / 2e-110 Eukaryotic aspartyl protease family protein (.1) Potri.018G015100 [exp] 81 / 2e-18 AT5G10770 483 / 5e-168 Eukaryotic aspartyl protease family protein (.1) Potri.018G014700 [exp] 77 / 4e-17 AT5G10770 407 / 1e-138 Eukaryotic aspartyl protease family protein (.1) Potri.018G014900 [exp] 77 / 5e-17 AT5G10770 408 / 3e-139 Eukaryotic aspartyl protease family protein (.1) Potri.016G000600 [exp] 76 / 8e-17 AT5G10770 286 / 2e-91 Eukaryotic aspartyl protease family protein (.1) Potri.010G128200 [exp] 76 / 1e-16 AT1G25510 622 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026905 pacid=23142859 polypeptide=Lus10026905 locus=Lus10026905.g ID=Lus10026905.BGIv1.0 annot-version=v1.0 ATGTACTTCGTCAATCTCAACGGAATCACCATCGGAGACTTGGTGATCCCCGCTTCTTCTTTGTCGTCGGCGGCGATCGACTCGGGGACTGAAATCAGCC GGCTCCCGCAGGAGGTGTACGAAGGCGTGAAAGCAGAGTTCAAGAAATGGATGGCGAATTACACGGAAGTAGAGGGATCGGATATTTTGGACACTTGTTA TGATATGGGCGGAGTGGAGATTAAGAATTTGAAAGTTCCGATTATGGTTCTGCATTTCGGGGATGAGTTGGATATGTATTTGAACGAGGGTAAGGTTGTT TGGCCGGACAAGGCCCGAAGCGGAGTTGCGTGTTTGGGGTTTGCTGCGGATAATGTCAGCATTATTGGGACTCATCAACACAGTGGCTGGAATCTGCTCT ACAACAATGAACGCAACACTGTTGCATTCGGCCCCGGAAATTGCTGA
AA sequence Show only first row Show all	>Lus10026905 pacid=23142859 polypeptide=Lus10026905 locus=Lus10026905.g ID=Lus10026905.BGIv1.0 annot-version=v1.0 MYFVNLNGITIGDLVIPASSLSSAAIDSGTEISRLPQEVYEGVKAEFKKWMANYTEVEGSDILDTCYDMGGVEIKNLKVPIMVLHFGDELDMYLNEGKVV WPDKARSGVACLGFAADNVSIIGTHQHSGWNLLYNNERNTVAFGPGNC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10760			Eukaryotic aspartyl protease f...		Lus10026905 [exp]	0	1
AT5G10770			Eukaryotic aspartyl protease f...		Lus10020099 [exp]	1.0	0.9737
AT5G10770			Eukaryotic aspartyl protease f...		Lus10000265 [exp]	1.7	0.9594
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10018379 [exp]	2.4	0.9615
AT5G26340		ATSTP13, MSS1, ...	SUGAR TRANSPORT PROTEIN 13, Ma...		Lus10041210 [exp]	3.9	0.9479
AT1G24140			Matrixin family protein (.1)		Lus10035221 [exp]	4.9	0.9476
AT1G10340			Ankyrin repeat family protein ...		Lus10038608 [exp]	5.2	0.9320
AT2G41810			Protein of unknown function, D...		Lus10035451 [exp]	5.5	0.8272
AT5G62230		ERL1	ERECTA-like 1 (.1.2)		Lus10027580 [exp]	5.7	0.9279
					Lus10041664 [exp]	6.3	0.9314
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10015286 [exp]	6.3	0.9500

Compare expression of checked genes

Lus10026905 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.