Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10770 170 / 3e-48 Eukaryotic aspartyl protease family protein (.1) AT5G10760 163 / 8e-46 Eukaryotic aspartyl protease family protein (.1) AT1G79720 130 / 2e-33 Eukaryotic aspartyl protease family protein (.1) AT1G01300 118 / 3e-29 Eukaryotic aspartyl protease family protein (.1) AT3G61820 113 / 1e-27 Eukaryotic aspartyl protease family protein (.1) AT3G20015 106 / 6e-25 Eukaryotic aspartyl protease family protein (.1) AT1G09750 105 / 7e-25 Eukaryotic aspartyl protease family protein (.1) AT5G33340 103 / 2e-24 CDR1 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) AT1G25510 103 / 7e-24 Eukaryotic aspartyl protease family protein (.1) AT3G54400 98 / 2e-22 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020100 [exp] 689 / 0 AT5G10770 190 / 7e-56 Eukaryotic aspartyl protease family protein (.1) Lus10000265 [exp] 184 / 3e-54 AT5G10770 173 / 3e-49 Eukaryotic aspartyl protease family protein (.1) Lus10042426 [exp] 186 / 5e-54 AT5G10770 553 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10020099 [exp] 175 / 7e-51 AT5G10770 149 / 4e-40 Eukaryotic aspartyl protease family protein (.1) Lus10042427 [exp] 154 / 5e-42 AT5G10770 476 / 7e-165 Eukaryotic aspartyl protease family protein (.1) Lus10041621 [exp] 152 / 2e-41 AT1G79720 510 / 1e-178 Eukaryotic aspartyl protease family protein (.1) Lus10003999 [exp] 132 / 3e-34 AT1G01300 636 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10024098 [exp] 112 / 3e-27 AT1G79720 399 / 4e-136 Eukaryotic aspartyl protease family protein (.1) Lus10002612 [exp] 110 / 1e-26 AT5G33340 393 / 5e-134 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G014500 [exp] 180 / 7e-52 AT5G10760 329 / 3e-108 Eukaryotic aspartyl protease family protein (.1) Potri.006G232600 [exp] 179 / 1e-51 AT5G10770 438 / 1e-150 Eukaryotic aspartyl protease family protein (.1) Potri.018G014600 [exp] 179 / 1e-51 AT5G10770 371 / 1e-124 Eukaryotic aspartyl protease family protein (.1) Potri.018G015100 [exp] 172 / 1e-48 AT5G10770 483 / 5e-168 Eukaryotic aspartyl protease family protein (.1) Potri.018G014900 [exp] 168 / 2e-47 AT5G10770 408 / 3e-139 Eukaryotic aspartyl protease family protein (.1) Potri.006G232500 [exp] 167 / 3e-47 AT5G10770 334 / 2e-110 Eukaryotic aspartyl protease family protein (.1) Potri.018G014700 [exp] 167 / 3e-47 AT5G10770 407 / 1e-138 Eukaryotic aspartyl protease family protein (.1) Potri.003G185175 [exp] 162 / 2e-45 AT1G79720 523 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G232400 [exp] 161 / 7e-45 AT5G10770 418 / 4e-143 Eukaryotic aspartyl protease family protein (.1) Potri.001G041700 [exp] 162 / 2e-44 AT1G79720 521 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10026906 pacid=23142946 polypeptide=Lus10026906 locus=Lus10026906.g ID=Lus10026906.BGIv1.0 annot-version=v1.0 ATGATTACACTAGCGTCGTCGTCATATCTTTTGATCAGCGCTGATGCCGCCAGGATTTTGCAGCAGGAATCACCAATTCATACCGATGAATTCGGGTTAG GAACCACCCTGACTCTCACACCGGACCAAGGATCCTTCATCATCACTGTAGGACTCGGCACTCCCAGACACGATTTCGACTTGCTCTTCGACACCGGCAG CGACACCAGTTGGGTCAAATGCAACTCTTCCTCCGGCGCCTCCTCCGCCGATAGTTCTTTCAACCCTTCTCTGTCACTAACCTCGTCCGCGGTCTCCTGC GGCACAAACTGCAACTACGCCGTCGACTACCACGACGGCTCGCAATCTTCCGGGGTTTACGCAAACGACACGCTTTCCTTGGACGCCTTGGTTAACAAAG GATTCATATTCGGTTGCGCTGAAAAGTCTGTTGGGGAATTTGGTCGAGCAGTTGGCGTGCTTGGTTTAGGACATGGCTATTTCTCCCTGTTAGCGCAAAC GGACGCGACTCTCCTCGGCTTGTTCTGCTACTGCCTTCCGCTCACCGATTCCTCAACCGGATCGCTCTGGTTCGGCGTCCAGGCGATGGAGACCTGCCGT CCGCAATCACCTTCCGCCAAGATGATCTCGCTTGATATTCATCCCAACAACAACAATGGCCTCACGAACTACTTCGTTAAATTCACCGGGATAACAATCG GACGTCGGAGATTGGACTTCGCGTCCTTGTTACCACCATCTTCTTCGTCCCAAATGAACACGATCATCGATTCCGGGACGATTGTGACCCGCCTTCCTAT GGCTGTGTATACGGAGCTTCGGGCGGCGTTTCGGGGATTGATGTCTGGTTTTGTTGAAGCAGAGCGGACTAAGCTGTTGGATAGTTGTTATAACCTGGAA GGAGTACTCGAGAGCGATTGGAGTCCGCCGGAGATGATGCTGCACTTTGAGGATTCGGTGGATGTGAAGTTGGATCCGTCGGCGGTGGTATTGAAGGAAG GAGATGAGAATCCAATGTCTCGAGTGTGCTTGGCGTTTGCCGGTAATGGGAATGAGGGGGATTTGACTATTGTTGGGAATCAACAGCATCGAGGGTTGAA AGTTTACTATGACATCAATGCCAAGAAATTGGCCTTCAACTCTGGAGGATGTAGCTCTTTTTGA
AA sequence Show only first row Show all	>Lus10026906 pacid=23142946 polypeptide=Lus10026906 locus=Lus10026906.g ID=Lus10026906.BGIv1.0 annot-version=v1.0 MITLASSSYLLISADAARILQQESPIHTDEFGLGTTLTLTPDQGSFIITVGLGTPRHDFDLLFDTGSDTSWVKCNSSSGASSADSSFNPSLSLTSSAVSC GTNCNYAVDYHDGSQSSGVYANDTLSLDALVNKGFIFGCAEKSVGEFGRAVGVLGLGHGYFSLLAQTDATLLGLFCYCLPLTDSSTGSLWFGVQAMETCR PQSPSAKMISLDIHPNNNNGLTNYFVKFTGITIGRRRLDFASLLPPSSSSQMNTIIDSGTIVTRLPMAVYTELRAAFRGLMSGFVEAERTKLLDSCYNLE GVLESDWSPPEMMLHFEDSVDVKLDPSAVVLKEGDENPMSRVCLAFAGNGNEGDLTIVGNQQHRGLKVYYDINAKKLAFNSGGCSSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10760			Eukaryotic aspartyl protease f...		Lus10026906 [exp]	0	1
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10031350 [exp]	4.8	0.8852
					Lus10041664 [exp]	6.5	0.8648
AT5G48290			Heavy metal transport/detoxifi...		Lus10025182 [exp]	8.7	0.8511
AT2G03430			Ankyrin repeat family protein ...		Lus10010667 [exp]	10.4	0.7681
AT1G64380	AP2_ERF		Integrase-type DNA-binding sup...		Lus10001898 [exp]	11.8	0.8308
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Lus10008283 [exp]	12.5	0.7537
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10028175 [exp]	13.3	0.8383
AT1G34420			leucine-rich repeat transmembr...		Lus10006067 [exp]	13.4	0.8140
AT3G47570			Leucine-rich repeat protein ki...		Lus10040186 [exp]	13.8	0.8355
AT2G22790			unknown protein		Lus10011575 [exp]	15.5	0.8291

Compare expression of checked genes

Lus10026906 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.