Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10750 388 / 1e-136 Protein of unknown function (DUF1336) (.1) AT5G24990 292 / 5e-99 Protein of unknown function (DUF1336) (.1) AT5G25010 287 / 4e-97 Protein of unknown function (DUF1336) (.1) AT5G25020 252 / 1e-83 Protein of unknown function (DUF1336) (.1) AT1G06050 213 / 8e-68 Protein of unknown function (DUF1336) (.1) AT5G45560 189 / 4e-55 Pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein (.1) AT4G19040 186 / 4e-54 EDR2 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) AT5G35180 176 / 5e-50 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) AT2G28320 152 / 1e-41 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) AT3G54800 147 / 6e-40 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026242 [exp] 455 / 7e-163 AT5G10750 440 / 1e-156 Protein of unknown function (DUF1336) (.1) Lus10042428 [exp] 443 / 5e-158 AT5G10750 444 / 6e-158 Protein of unknown function (DUF1336) (.1) Lus10008154 [exp] 234 / 4e-76 AT1G06050 362 / 5e-126 Protein of unknown function (DUF1336) (.1) Lus10012149 [exp] 188 / 1e-54 AT4G19040 1227 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Lus10007596 [exp] 187 / 3e-54 AT4G19040 1217 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Lus10020102 [exp] 171 / 6e-54 AT5G10750 154 / 1e-47 Protein of unknown function (DUF1336) (.1) Lus10019591 [exp] 170 / 4e-48 AT5G35180 931 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Lus10040015 [exp] 169 / 2e-47 AT5G35180 1034 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Lus10019068 [exp] 162 / 8e-46 AT5G35180 589 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G014234 [exp] 407 / 7e-144 AT5G10750 428 / 5e-152 Protein of unknown function (DUF1336) (.1) Potri.017G027700 [exp] 216 / 6e-69 AT1G06050 399 / 4e-140 Protein of unknown function (DUF1336) (.1) Potri.007G130400 [exp] 210 / 1e-66 AT1G06050 390 / 1e-136 Protein of unknown function (DUF1336) (.1) Potri.008G213000 [exp] 191 / 1e-55 AT4G19040 1017 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Potri.001G132900 [exp] 182 / 2e-52 AT4G19040 1159 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Potri.003G100600 [exp] 180 / 1e-51 AT4G19040 1182 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Potri.018G113100 [exp] 164 / 9e-46 AT5G35180 1028 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Potri.008G038800 [exp] 162 / 3e-45 AT3G54800 922 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2) Potri.010G223400 [exp] 158 / 8e-44 AT3G54800 922 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2) Potri.009G011200 [exp] 156 / 4e-43 AT2G28320 1071 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07059 [flax] [poplar] DUF1336 Protein of unknown function (DUF1336)
Representative CDS sequence Show only first row Show all	>Lus10026907 pacid=23142898 polypeptide=Lus10026907 locus=Lus10026907.g ID=Lus10026907.BGIv1.0 annot-version=v1.0 ATGTCCCCGGCCAGACAGAATCTCCAGGACTCCCCCACTCCCGATTGGATCTCGGAGGCAATCAACGGCGGATCCCTCCGCCACGTCGACCTCGAAACCG GAAAAAACGGCTGGGCTTCACCTCCCGGTAACCTCTTCTCTCTCCGCTCTAAGAATTTCTTCACCAATAATAAAAAATCCCCCGCTGGCGACTACCTGCT CTCCCCCGCCGGCATGGATTGGCTCAAATCCGCTACAAAACTCGATAACGTCCTCGGCCGCCCCGACAATCGAGTTTCCAAGGCCCTACGGAAGGCTCAG TCTGAAGGGGAGTCACAGAAAAGCTTCATCCTCGCCGTGAACCTCCAGGTCCCGGGCGGGAAAGACCAACACAGCGCAGTTTTCTACTTCGCTTCGGAAG ATCCGCTTCCTCCGGAGAGCCACCTGTACAAATTCGTGAATGGAGACGACGCGTACCGGAACCAGCGGTTCAAGATCGTGAACCGGATAGTGAAGGGGCC GTGGATCGTGAGGAAAACTGTGGGGAATTACAGCGCGTGCCTTTTGGGGAAAGCGCTGACGTGCAATTACCATAGAGGACCTAATTACTTGGAGATCGAT GTGGACATAGGGAGCTCGGCGATAGCGACGGCGATACTGCACCTGGCGTTGGGGTGCGTGACCAGCGTGACGATCGACATGGGGTTCGTGGTGGAGGCGC AGGAGGAAGAGGAGCTGCCGGAGAGGTTGTTGGGAGCTGTTAGGGTTTGTCAGATGGAGATGTCGTCGGCGACGGTTGTGGAAACGCAGACGGGCGGCGG GCGAGGGTCGATTGGGTTGGCGAAGGTGAACCATCATGAAGGAACGATGAATTGA
AA sequence Show only first row Show all	>Lus10026907 pacid=23142898 polypeptide=Lus10026907 locus=Lus10026907.g ID=Lus10026907.BGIv1.0 annot-version=v1.0 MSPARQNLQDSPTPDWISEAINGGSLRHVDLETGKNGWASPPGNLFSLRSKNFFTNNKKSPAGDYLLSPAGMDWLKSATKLDNVLGRPDNRVSKALRKAQ SEGESQKSFILAVNLQVPGGKDQHSAVFYFASEDPLPPESHLYKFVNGDDAYRNQRFKIVNRIVKGPWIVRKTVGNYSACLLGKALTCNYHRGPNYLEID VDIGSSAIATAILHLALGCVTSVTIDMGFVVEAQEEEELPERLLGAVRVCQMEMSSATVVETQTGGGRGSIGLAKVNHHEGTMN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10750			Protein of unknown function (D...		Lus10026907 [exp]	0	1
AT1G04240	AUX_IAA	IAA3, SHY2	SHORT HYPOCOTYL 2, indole-3-ac...		Lus10039413 [exp]	1.0	0.8490
AT1G70590			F-box family protein (.1)		Lus10004621 [exp]	11.2	0.7860
AT1G14700		PAP3, ATPAP3	purple acid phosphatase 3 (.1....		Lus10034429 [exp]	11.6	0.8489
AT5G03960		IQD12	IQ-domain 12 (.1)		Lus10042027 [exp]	12.3	0.7734
AT4G01700			Chitinase family protein (.1)		Lus10010860 [exp]	15.8	0.7496
AT1G05870			Protein of unknown function (D...		Lus10025562 [exp]	17.5	0.7960
AT4G24510		VC2, VC-2, CER2	ECERIFERUM 2, HXXXD-type acyl-...		Lus10042870 [exp]	18.7	0.7801
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Lus10005428 [exp]	23.6	0.7985
AT4G38670			Pathogenesis-related thaumatin...		Lus10036435 [exp]	24.5	0.8455
AT5G40870		UKL1, ATUK/UPRT...	URIDINE KINASE-LIKE 1, uridine...		Lus10032051 [exp]	25.0	0.7523

Compare expression of checked genes

Lus10026907 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.