Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31750 486 / 2e-175 WIN2 HOPW1-1-interacting 2 (.1) AT5G24940 464 / 2e-164 Protein phosphatase 2C family protein (.1) AT5G10740 454 / 6e-162 Protein phosphatase 2C family protein (.1) AT1G43900 347 / 2e-119 Protein phosphatase 2C family protein (.1) AT5G53140 326 / 1e-110 Protein phosphatase 2C family protein (.1) AT1G78200 219 / 2e-70 Protein phosphatase 2C family protein (.1.2) AT2G20630 210 / 7e-67 PIA1 PP2C induced by AVRRPM1 (.1.2) AT1G34750 206 / 3e-65 Protein phosphatase 2C family protein (.1) AT4G28400 205 / 4e-65 Protein phosphatase 2C family protein (.1) AT1G22280 204 / 2e-64 PAPP2C phytochrome-associated protein phosphatase type 2C (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020104 [exp] 557 / 0 AT4G31750 523 / 0.0 HOPW1-1-interacting 2 (.1) Lus10026239 [exp] 464 / 4e-167 AT4G31750 454 / 3e-163 HOPW1-1-interacting 2 (.1) Lus10042430 [exp] 463 / 9e-167 AT4G31750 452 / 2e-162 HOPW1-1-interacting 2 (.1) Lus10014926 [exp] 342 / 3e-118 AT5G53140 448 / 3e-158 Protein phosphatase 2C family protein (.1) Lus10019012 [exp] 343 / 8e-118 AT5G53140 474 / 2e-167 Protein phosphatase 2C family protein (.1) Lus10042775 [exp] 333 / 8e-112 AT1G43900 434 / 4e-150 Protein phosphatase 2C family protein (.1) Lus10029745 [exp] 333 / 5e-111 AT1G43900 422 / 2e-144 Protein phosphatase 2C family protein (.1) Lus10039341 [exp] 310 / 4e-104 AT5G53140 444 / 1e-154 Protein phosphatase 2C family protein (.1) Lus10018618 [exp] 216 / 4e-69 AT4G28400 427 / 2e-152 Protein phosphatase 2C family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G013900 [exp] 497 / 9e-180 AT4G31750 533 / 0.0 HOPW1-1-interacting 2 (.1) Potri.006G267600 [exp] 491 / 2e-177 AT4G31750 535 / 0.0 HOPW1-1-interacting 2 (.1) Potri.002G074500 [exp] 369 / 4e-129 AT1G43900 429 / 1e-151 Protein phosphatase 2C family protein (.1) Potri.005G186001 [exp] 366 / 2e-128 AT1G43900 422 / 4e-149 Protein phosphatase 2C family protein (.1) Potri.015G019200 [exp] 336 / 3e-115 AT5G53140 492 / 5e-175 Protein phosphatase 2C family protein (.1) Potri.012G002100 [exp] 333 / 2e-114 AT5G53140 486 / 2e-172 Protein phosphatase 2C family protein (.1) Potri.002G097200 [exp] 213 / 6e-68 AT1G34750 449 / 2e-161 Protein phosphatase 2C family protein (.1) Potri.006G081400 [exp] 207 / 9e-66 AT4G28400 348 / 3e-121 Protein phosphatase 2C family protein (.1) Potri.005G164600 [exp] 206 / 2e-65 AT1G34750 450 / 1e-161 Protein phosphatase 2C family protein (.1) Potri.017G013300 [exp] 205 / 6e-65 AT4G28400 439 / 2e-157 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10026908 pacid=23142850 polypeptide=Lus10026908 locus=Lus10026908.g ID=Lus10026908.BGIv1.0 annot-version=v1.0 ATGAGTTCGTTCCATCTTTCTCCCCATGATAGTCAGAACGGAAAGTTCAGCTATGGGTATGCAAGCTCGCCAGGGAAGAGATCTTCCATGGAGGACTTTT GCGAAACAAGAATCGATGGTGTTGATGGGGAAATAGTTGGTCTTTTCGGAGTCTTCGATGGTCATGGGGGAGCACGCGCTGCTGAATATGTGAAGCAAAA CCTTTTCAGTAATCTGATCAGCCACCCGAAGTTCATTTCGGATACTAAATCTGCTATAGCTGATGCTTACAATCACACAGACTCAGAGTTTCTCAAATTA GAAAATACTCACGACAGGGATGCTGGCTCAACTGCTTCCACAGCTATTCTTGTTGGTGATCGGCTTCTTGTTGCCAATGTTGGAGATTCCAGAGCTGTCA TATGCCGGGCTGGAAATGCTATTGCTGTTTCTCGAGATCATAAGCCAGACCAAACTGATGAACGTCAGAGGATTGAAGATGCAGGAGGATTTGTATTGTG GGCAGGCACCTGGAGGGTTGGTGGTGTTCTTGCTGTCTCTCGGGCATTTGGGGATCGGCTCTTGAAGCAGTATGTTGTCGCTGACCCAGAAATTCAGGAA GAGAAAGTTGACAGTTCTCTTGAATTTCTCATCCTTGCAAGTGATGGATTATGGGACGTTGTAACAAATGAGGAGGCTGTTGAGATGACGAAAGCAATCG AGGACCCGGAGCAGGGGGCGAAGAGGCTGTTACAAGAAGCGTACCAGAGAGGAAGCGCAGATAACATCACATGCGTTGTAGTTCGCTTCTTGGGTGGTGG TGGTGCTACCTCTCAATCTCCTGCAAGTAACCAACATTACAGTAGCAACTCGCACTTGCCTGCGAGTTGA
AA sequence Show only first row Show all	>Lus10026908 pacid=23142850 polypeptide=Lus10026908 locus=Lus10026908.g ID=Lus10026908.BGIv1.0 annot-version=v1.0 MSSFHLSPHDSQNGKFSYGYASSPGKRSSMEDFCETRIDGVDGEIVGLFGVFDGHGGARAAEYVKQNLFSNLISHPKFISDTKSAIADAYNHTDSEFLKL ENTHDRDAGSTASTAILVGDRLLVANVGDSRAVICRAGNAIAVSRDHKPDQTDERQRIEDAGGFVLWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQE EKVDSSLEFLILASDGLWDVVTNEEAVEMTKAIEDPEQGAKRLLQEAYQRGSADNITCVVVRFLGGGGATSQSPASNQHYSSNSHLPAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31750		WIN2	HOPW1-1-interacting 2 (.1)		Lus10026908 [exp]	0	1
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036820 [exp]	6.2	0.9503
AT4G37320		CYP81D5	"cytochrome P450, family 81, s...		Lus10000038 [exp]	8.8	0.9493
AT3G50920			Phosphatidic acid phosphatase ...		Lus10028327 [exp]	9.8	0.9454
					Lus10003083 [exp]	11.4	0.9242
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10016139 [exp]	11.6	0.9369
AT3G50210			2-oxoglutarate (2OG) and Fe(II...		Lus10006259 [exp]	13.2	0.9446
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10032745 [exp]	15.2	0.9446
AT5G43540	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10033867 [exp]	16.6	0.9431
AT5G18270	NAC	ANAC087	Arabidopsis NAC domain contain...		Lus10003435 [exp]	17.0	0.9426
AT1G70410		ATBCA4	beta carbonic anhydrase 4 (.1....		Lus10030614 [exp]	17.6	0.9167

Compare expression of checked genes

Lus10026908 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.