Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24930 377 / 1e-129 CO COL4, ATCOL4 CONSTANS-like 4 (.1) AT2G24790 284 / 8e-95 CO COL3, ATCOL3 CONSTANS-like 3 (.1.2) AT5G57660 269 / 6e-88 CO COL5, ATCOL5 CONSTANS-like 5 (.1) AT3G02380 240 / 8e-77 CO ATCOL2, COL2 CONSTANS-like 2 (.1) AT5G15850 226 / 3e-71 CO COL1, ATCOL1 CONSTANS-like 1 (.1) AT5G15840 226 / 3e-71 CO FG, CO CONSTANS, B-box type zinc finger protein with CCT domain (.1.2) AT2G21320 84 / 2e-19 CO B-box zinc finger family protein (.1) AT4G38960 82 / 3e-18 CO B-box type zinc finger family protein (.1.2.3) AT1G78600 84 / 5e-18 CO BBX22, DBB3, STH3, LZF1 SALT TOLERANCE HOMOLOG 3, DOUBLE B-BOX 3, B-box domain protein 22, light-regulated zinc finger protein 1 (.1.2) AT2G33500 83 / 2e-17 CO COL14 B-box type zinc finger protein with CCT domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020105 [exp] 580 / 0 AT5G24930 398 / 6e-138 CONSTANS-like 4 (.1) Lus10042431 [exp] 220 / 7e-71 AT5G24930 180 / 7e-55 CONSTANS-like 4 (.1) Lus10026238 [exp] 222 / 1e-70 AT5G24930 163 / 9e-48 CONSTANS-like 4 (.1) Lus10015619 [exp] 200 / 1e-60 AT5G57660 210 / 3e-64 CONSTANS-like 5 (.1) Lus10041096 [exp] 105 / 1e-25 AT5G48250 374 / 2e-129 B-box type zinc finger protein with CCT domain (.1) Lus10037636 [exp] 98 / 8e-24 AT5G57660 119 / 5e-32 CONSTANS-like 5 (.1) Lus10040900 [exp] 98 / 1e-22 AT2G47890 289 / 1e-95 B-box type zinc finger protein with CCT domain (.1.2) Lus10035472 [exp] 84 / 5e-19 AT4G38960 229 / 4e-77 B-box type zinc finger family protein (.1.2.3) Lus10031087 [exp] 84 / 5e-19 AT4G38960 229 / 5e-77 B-box type zinc finger family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G267700 [exp] 420 / 1e-147 AT5G24930 361 / 1e-123 CONSTANS-like 4 (.1) Potri.018G013800 [exp] 417 / 2e-146 AT5G24930 348 / 2e-118 CONSTANS-like 4 (.1) Potri.006G173600 [exp] 294 / 1e-97 AT5G57660 315 / 1e-105 CONSTANS-like 5 (.1) Potri.018G096084 [exp] 285 / 5e-94 AT5G57660 283 / 5e-93 CONSTANS-like 5 (.1) Potri.004G108320 [exp] 251 / 1e-80 AT3G02380 302 / 8e-101 CONSTANS-like 2 (.1) Potri.017G107500 [exp] 243 / 8e-78 AT3G02380 330 / 7e-112 CONSTANS-like 2 (.1) Potri.014G134601 [exp] 92 / 7e-21 AT2G47890 174 / 4e-53 B-box type zinc finger protein with CCT domain (.1.2) Potri.005G117100 [exp] 86 / 1e-19 AT2G21320 192 / 4e-63 B-box zinc finger family protein (.1) Potri.004G162600 [exp] 86 / 2e-19 AT4G38960 248 / 1e-84 B-box type zinc finger family protein (.1.2.3) Potri.007G015200 [exp] 85 / 2e-19 AT4G38960 197 / 5e-65 B-box type zinc finger family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00643 [flax] [poplar] zf-B_box B-box zinc finger CL0281 [flax] [poplar] CCT PF06203 [flax] [poplar] CCT CCT motif
Representative CDS sequence Show only first row Show all	>Lus10026909 pacid=23142939 polypeptide=Lus10026909 locus=Lus10026909.g ID=Lus10026909.BGIv1.0 annot-version=v1.0 ATGGCTTCCAAGCTCTGCGATTCCTGCAAGTCCGCCACTGCCGCGCTCTTCTGCCGCCCGGACTCCGCCTTCCTCTGCGTCAGCTGTGACTCCAAGATCC ACGCCGCCAACAAGCTGGCGTCCCGCCACCCTCGCGTCTGGGTCTGCGAGGTCTGCGAGCAGGCCCCTGCTCACGTCACCTGCAAGGCCGACGCCGCAGC TCTCTGCGTCTCCTGCGACCGCGACATACACTCTGCTAACCCGCTCGCCCGCCGCCACGAGCGTGTTCCGATAGTCCCCTTCTACGACTCCGTCTCCTCC GGCGACACTCCTGCCACGGTCAAGTCATCCGACGCTGCTGCTACTGCTGTCGCGGTTAACTTCCTTGACGACCGGTACTTCGCCGATGACGTCGACGTCG ACGATAATGTAAGCAGGGAGGAAGCCGAGGCTGCTTCGTGGCTGCTACCCAACCCCGGGAACAACAAGGCGATTGATAATCAGTCTTCTGATCTGGAGCT GAACACCGGCCAGTTCCTGTTCGGAGAAATGGATCCGTATCTGGATCTGGACTACGGAACGACGGTGGATCCCAAAATTGAAGCGCAGGAGCAGAATAGC TCCGGATCCGACGGAGTTGTTCCTCACGTTGGTGGTGGTCAGGCTCCGGTCATGATGAATGACCACTGCTTCGAGTTTGATTTCTCCGCCGATGGATCCA AGGCTTTCGCTGCATACGGATACAGCGCTCAATGCTTGAGCCACAGCGTATCGTCATCGTCAATAGACGTGGGAGTTGTACCGGAAGGATGCGCAATGAC GGAGATATCAAATCCTGCTGCGGATTCGGCAGTGAGCCAGGCGGTTCCGTTGTCGGCGGCGGATAGGGAGGCAAGGGTGATGAGATACAGGGAGAAGAGG AAGAACAGGAAGTTCGAGAAGACGATTCGTTACGCATCGAGGAAAGCGTACGCAGAGACGAGGCCGAGAATCAAAGGAAGGTTCGCAAAGCGCAAAGATA TGGAGGTTGAAGCTGACCGTAGCATGTACGGTTTCGGCGTCGTCCCTTCCTTCTGA
AA sequence Show only first row Show all	>Lus10026909 pacid=23142939 polypeptide=Lus10026909 locus=Lus10026909.g ID=Lus10026909.BGIv1.0 annot-version=v1.0 MASKLCDSCKSATAALFCRPDSAFLCVSCDSKIHAANKLASRHPRVWVCEVCEQAPAHVTCKADAAALCVSCDRDIHSANPLARRHERVPIVPFYDSVSS GDTPATVKSSDAAATAVAVNFLDDRYFADDVDVDDNVSREEAEAASWLLPNPGNNKAIDNQSSDLELNTGQFLFGEMDPYLDLDYGTTVDPKIEAQEQNS SGSDGVVPHVGGGQAPVMMNDHCFEFDFSADGSKAFAAYGYSAQCLSHSVSSSSIDVGVVPEGCAMTEISNPAADSAVSQAVPLSAADREARVMRYREKR KNRKFEKTIRYASRKAYAETRPRIKGRFAKRKDMEVEADRSMYGFGVVPSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24930	CO	COL4, ATCOL4	CONSTANS-like 4 (.1)		Lus10026909 [exp]	0	1
AT3G55140			Pectin lyase-like superfamily ...		Lus10030313 [exp]	1.7	0.8835
AT2G34620			Mitochondrial transcription te...		Lus10032120 [exp]	4.2	0.8891
AT5G24930	CO	COL4, ATCOL4	CONSTANS-like 4 (.1)		Lus10020105 [exp]	4.6	0.8769
AT2G01060	GARP		myb-like HTH transcriptional r...		Lus10038734 [exp]	5.7	0.8356
AT5G43700	AUX_IAA	IAA4, ATAUX2-11	indole-3-acetic acid inducible...		Lus10002723 [exp]	7.1	0.8574
AT1G21790			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10025673 [exp]	7.4	0.8654
AT3G59400		GUN4	GENOMES UNCOUPLED 4, enzyme bi...		Lus10018961 [exp]	8.9	0.8836
AT2G34620			Mitochondrial transcription te...		Lus10014567 [exp]	10.6	0.8596
AT5G37980			Zinc-binding dehydrogenase fam...		Lus10004380 [exp]	11.0	0.8789
AT1G15820		CP24, LHCB6	light harvesting complex photo...		Lus10020417 [exp]	14.8	0.8804

Compare expression of checked genes

Lus10026909 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.