Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25760 78 / 1e-18 ATGDU2 glutamine dumper 2 (.1) AT4G31730 70 / 2e-15 ATGDU1, GDU1 glutamine dumper 1 (.1) AT5G24920 69 / 3e-15 ATGDU5 glutamine dumper 5 (.1) AT2G24762 67 / 4e-14 ATGDU4 glutamine dumper 4 (.1) AT5G57685 65 / 2e-13 LSB1, ATGDU3 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020107 [exp] 214 / 2e-71 AT4G31730 122 / 1e-35 glutamine dumper 1 (.1) Lus10008910 [exp] 83 / 7e-20 AT5G57685 125 / 6e-37 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) Lus10006986 [exp] 78 / 3e-18 AT5G57685 124 / 2e-36 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) Lus10019986 [exp] 67 / 8e-14 AT5G57685 125 / 7e-37 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) Lus10019985 [exp] 67 / 8e-14 AT5G57685 123 / 3e-36 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) Lus10006987 [exp] 64 / 6e-13 AT5G57685 125 / 2e-37 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) Lus10015513 [exp] 63 / 2e-12 AT5G57685 124 / 2e-36 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G013600 [exp] 96 / 5e-25 AT4G25760 79 / 2e-19 glutamine dumper 2 (.1) Potri.006G267900 [exp] 95 / 1e-24 AT5G57685 83 / 2e-20 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) Potri.006G173901 [exp] 72 / 3e-16 AT5G57685 89 / 8e-23 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) Potri.004G108800 [exp] 44 / 6e-06 AT5G24920 57 / 2e-11 glutamine dumper 5 (.1) Potri.017G107300 [exp] 40 / 0.0001 AT4G25760 75 / 1e-18 glutamine dumper 2 (.1) Potri.017G107400 [exp] 38 / 0.0006 AT4G31730 76 / 1e-18 glutamine dumper 1 (.1) Potri.017G107100 [exp] 37 / 0.0007 AT5G24920 48 / 2e-08 glutamine dumper 5 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026911 pacid=23142844 polypeptide=Lus10026911 locus=Lus10026911.g ID=Lus10026911.BGIv1.0 annot-version=v1.0 ATGAGACCAATCAGCGCCTCTGAAGCTACCACCATGACTTCTTCATCATACGCAATGTTGACGCCGCCGGCGATCCCGCATCAGATCATGCGCTCACCGT GGCACTCTCCAGTGCCGTACCTATTCGGCGGGCTGGCAGCGATGTTAGGGCTGATCGCTTTCGCCTTGCTCATCTTAGCCTGCTCTTACTGGAGGCTTTC AAACCGCCGCCAACGAGGCGGCGGCGACGGTGACGATATCGAGAGCGGGAATGAAAAAGAAGGCAACAAAACAGAGAAAGTTTTCGAGGAGAAGTTTCTG GTAATCATGGCTGGACACAACAAGCCTACGTTCTTGGCCACCCCTGCTTCCAACAGACCTACTTATTGCGGATGCGGAGACAACAAGGGCTTTGGCAGAG ACGGGATAAAGATGGAGAATGACGAGAAAGTGAAACGAGAATCTCATGACCATGGAGAATCCGCAGCGACGGCGACGACGACCGAAGAAGAAGAAGCGGA AGAAAGGGAAACGGCGGCGGAGAGGCGAGAAGGACAAAATTAA
AA sequence Show only first row Show all	>Lus10026911 pacid=23142844 polypeptide=Lus10026911 locus=Lus10026911.g ID=Lus10026911.BGIv1.0 annot-version=v1.0 MRPISASEATTMTSSSYAMLTPPAIPHQIMRSPWHSPVPYLFGGLAAMLGLIAFALLILACSYWRLSNRRQRGGGDGDDIESGNEKEGNKTEKVFEEKFL VIMAGHNKPTFLATPASNRPTYCGCGDNKGFGRDGIKMENDEKVKRESHDHGESAATATTTEEEEAEERETAAERREGQN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31730		ATGDU1, GDU1	glutamine dumper 1 (.1)		Lus10026911 [exp]	0	1
AT3G49940	AS2	LBD38	LOB domain-containing protein ...		Lus10007758 [exp]	1.4	0.7997
AT4G31730		ATGDU1, GDU1	glutamine dumper 1 (.1)		Lus10020107 [exp]	1.4	0.8834
AT3G52500			Eukaryotic aspartyl protease f...		Lus10013325 [exp]	18.0	0.7592
AT3G52500			Eukaryotic aspartyl protease f...		Lus10013324 [exp]	20.8	0.7550
AT3G55420			unknown protein		Lus10023413 [exp]	21.6	0.7365
AT5G23100			Protein of unknown function, D...		Lus10000863 [exp]	23.1	0.7708
AT3G55420			unknown protein		Lus10040295 [exp]	29.9	0.7552
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10029701 [exp]	32.2	0.7520
AT1G27660	bHLH	bHLH110	basic helix-loop-helix (bHLH) ...		Lus10010638 [exp]	33.0	0.7353
AT5G01910			unknown protein		Lus10025214 [exp]	36.1	0.7067

Compare expression of checked genes

Lus10026911 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.