Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29120 721 / 0 ATGLR2.7 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) AT2G29110 691 / 0 ATGLR2.8 glutamate receptor 2.8 (.1) AT2G24720 650 / 0 ATGLR2.2 glutamate receptor 2.2 (.1) AT2G29100 642 / 0 ATGLR2.9 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) AT5G27100 640 / 0 ATGLR2.1 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.1, glutamate receptor 2.1 (.1) AT5G11210 626 / 0 ATGLR2.5 ARABIDOPSIS THALIANA GLU, glutamate receptor 2.5 (.1) AT2G24710 623 / 0 ATGLR2.3 glutamate receptor 2.3 (.1) AT4G31710 565 / 0 ATGLR2.4 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.4, glutamate receptor 2.4 (.1) AT1G42540 456 / 1e-146 ATGLR3.3 glutamate receptor 3.3 (.1) AT5G11180 440 / 6e-141 ATGLR2.6 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.6, glutamate receptor 2.6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020109 [exp] 1372 / 0 AT2G29120 822 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10003436 [exp] 1149 / 0 AT2G29120 867 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10026235 [exp] 935 / 0 AT2G29120 912 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10026876 [exp] 763 / 0 AT2G29120 538 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10039671 [exp] 446 / 2e-142 AT1G05200 1239 / 0.0 glutamate receptor 3.4 (.1.2) Lus10027171 [exp] 442 / 3e-141 AT1G05200 1243 / 0.0 glutamate receptor 3.4 (.1.2) Lus10035980 [exp] 431 / 4e-137 AT3G51480 1149 / 0.0 glutamate receptor 3.6 (.1) Lus10012245 [exp] 419 / 2e-132 AT1G42540 1258 / 0.0 glutamate receptor 3.3 (.1) Lus10027170 [exp] 399 / 2e-125 AT2G32400 970 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G012900 [exp] 880 / 0 AT2G29120 910 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.018G012100 [exp] 879 / 0 AT2G29120 934 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.018G012600 [exp] 875 / 0 AT2G29120 946 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.018G013200 [exp] 843 / 0 AT2G29120 882 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.018G013000 [exp] 804 / 0 AT2G29120 908 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.006G270400 [exp] 802 / 0 AT2G29110 874 / 0.0 glutamate receptor 2.8 (.1) Potri.006G268400 [exp] 799 / 0 AT2G29110 835 / 0.0 glutamate receptor 2.8 (.1) Potri.006G268700 [exp] 795 / 0 AT2G29120 855 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.006G268200 [exp] 792 / 0 AT2G29120 841 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.006G268900 [exp] 789 / 0 AT2G29110 882 / 0.0 glutamate receptor 2.8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0144 [flax] [poplar] Periplas_BP PF01094 [flax] [poplar] ANF_receptor Receptor family ligand binding region CL0030 [flax] [poplar] Ion_channel PF00060 [flax] [poplar] Lig_chan Ligand-gated ion channel CL0177 [flax] [poplar] PBP PF00497 [flax] [poplar] SBP_bac_3 Bacterial extracellular solute-binding proteins, family 3
Representative CDS sequence Show only first row Show all	>Lus10026913 pacid=23142966 polypeptide=Lus10026913 locus=Lus10026913.g ID=Lus10026913.BGIv1.0 annot-version=v1.0 ATGCAAGCTGGTTTCATCATAGCTCTTGGAGAAAAGGCTCAAGTTCCAATAATCTCATTCTCGGCATCAAGCCCCGCTATCGATGCTTCAAACCACAACC CTTACTTCTTCCGTGCTACCCCAACAGACTCAACTCAAGTAAATGTCATAAGCGCCATAGTGAAAGCCTTTGGATGGAGGGAAGCTGTACCAATCTACAT CGACAATGATTTTGGTAATGGAATCATACCTCACTTGGTAGCCGCTCTTGAAGCTATCAATTGCCATGTCCCACATCGTGTCGGGATTCCCCCATCTGCT ACGGATGATTTAATTGGCGAAGAGCTTTTCAAGCTTATGACAATGCAAACTCGAGTCTTCATCGTGCATATGAGTCCCGATATGGGAGCGAGGCTCTTTG CCAAGGCTAGAGAATCTAGTATGATGGCAGCAGGTTACGTGTGGATCGTGACGGATGGAATCACTGCTTTCTTGAATTCCATGGATAGTTCTGTTCTTGA ATCAATGCAGGGTGTAGTTGGTATCAGACCTTATGTGCCAGAAACTAGAGAAGTTATCCGTTTTCGGAGACGGTGGAAGAAGAAGTTCTACCAAGACCAC CTCAACAGTTATGGATTGTGGGCATATGATGCTACTACAGCACTAGCCATGGCAGTTGAGAAGATTCATGTTGGAGATAGAAACTCTGGTTTCACATATG ATAAAGACAATGTTTCTTCAACTGATCTTGAAAGGTTAGGGGTGTTTACAGGTGGTCCAACTCTGGTTCATGAGCTATCAAGAACAAGGTTCAAAGGACT GAGTGGAGATTTTGTACATGAAAAAGGGCAGTTGAGAGCTTCAGATTATCAGATAGTGAATGTGAATGGCAATGGAGTTAGAGGGGTAGGGTTTTGGTCT TCTCAAAACGGGCGGCTCACTAAGGACAAAATGAAGTTGTCTTCATCAACAGGAGATGTTTCCAGGTTGCTTGGGAAAATCCTATGGCCAGGGGATATAA CTTCAGCTCCTAAAGGGTTTGAGATCCCAACAAATGGGAAGAAGTTGAAGATAGGGGTTCCTGTGAAGCATGGTTTCTTTGAGTTTGTTAAAGTTGACAA CAGTACTGGCGTTACTACTGGATACAGCATCGACATTTTTGAAGCAGTTCGTAATGCACTGCCGTATGCACTTCCCATAGAGTATGTGCCTTTTGCTAAA CCTGATGGAGAAAGCGCCGGGCACTACAATGATCTGGTTTACCAAGTCTTTTTAGGGAATTACGACGGTGTAGTGGGAGATATAACCATCCGAGCGAATA GGTCGAAGTTCGTAGACTTCTCATTGCCGTACACAGAATCAGGAGTGGCAATGTTGGTACCAGTTAAAAAAAATGGAAGCAAGAATGCATGGGTGTTCTT GAAGCCATTGACATGGGATCTTTGGGTCACCACTTTTTTGTTCTTCGTTTTCATTGGGTTTGTGATCTGGGTTTTGGAGCACAGGATCAATAACGACTTC AGAGGACCTCCTTCCCATCAGGCTGGAACTAGTTTCTGGTTTTCCTTCTCCACCATGGTTTTCGCCCACAGGGAGAAGGTAGTGAGCAACTTGACAAGGA CAGTGATGATTATTTGGTGCTTTGTGGTTCTAATACTGACTCAGAGCTACACCGCGAGTTTGACTAGCCTTCTCACAGTCCAACAGCTCCAACCTACAAT TACAAACATAAATGACTTAAGCAAAGAGGAGCCTGTGGGGTTTCAGGAGTCGACATTTATAGAGGATCTTCTAACACAAGAGGGCTACAACAATAGGGTA CCTTTTAATAGCACAGAGCAGTGCAACTCGCTTTTCTCCCATGGAAAAATCGTTGCAGTATTCGACGAAGTCCCCTACGTGAAGCTATTCCTAGCAAAGT ATTGCTCCAACTACGCCATCATCGACCTACCTTATAAAACGGACGGCTTCGGATTTGTGTTCCCCAAAGGTTCTCCACTAGTTAATGACATTTCCAGAGC AGTTCTGAATGTAACTGAGGGCGGTGGAATGTTGGAAATGCAAAAAAAATGGTTCGACTTCAAGGGTAGGTGCCCGGATTTGGGTGCATCAGTCTCTTCC GAGAGTGAGAAGCTCGGGTTAAATAGCTTCTGGAGCCTGTTTGTGATAGCTGGAGTTGCTGCACTTTCAGCTCTCTTCGCTTTTGCTGCCATGTTCATTT ATGAACACAGGAATTCTCTGCTACATGATTCCAACCCTTCCTTCTGGGGAAGGATCGTGAATCTGTTGAAGACCTTTGACGACAAGGATCTTGAATCCCA TACTTTCAGGACTGAGAGGGATAATGCTGAGGTGAATCTTGTCGATTTGAACAATTTGCAGCAGCAGCAGCATCAACAAAGCCCTTCCACCTACTCTGTG CATTTGGATCGTGATTCAATACCACAGACGCCGATTACTCCGTCTCTCGAGGCTCGAAATGATATCACACCTCAAGAACCAGCACAAGAAATAGAGACGA GTGTGGTAAGTGATTCACATCCAAATCATAACTAA
AA sequence Show only first row Show all	>Lus10026913 pacid=23142966 polypeptide=Lus10026913 locus=Lus10026913.g ID=Lus10026913.BGIv1.0 annot-version=v1.0 MQAGFIIALGEKAQVPIISFSASSPAIDASNHNPYFFRATPTDSTQVNVISAIVKAFGWREAVPIYIDNDFGNGIIPHLVAALEAINCHVPHRVGIPPSA TDDLIGEELFKLMTMQTRVFIVHMSPDMGARLFAKARESSMMAAGYVWIVTDGITAFLNSMDSSVLESMQGVVGIRPYVPETREVIRFRRRWKKKFYQDH LNSYGLWAYDATTALAMAVEKIHVGDRNSGFTYDKDNVSSTDLERLGVFTGGPTLVHELSRTRFKGLSGDFVHEKGQLRASDYQIVNVNGNGVRGVGFWS SQNGRLTKDKMKLSSSTGDVSRLLGKILWPGDITSAPKGFEIPTNGKKLKIGVPVKHGFFEFVKVDNSTGVTTGYSIDIFEAVRNALPYALPIEYVPFAK PDGESAGHYNDLVYQVFLGNYDGVVGDITIRANRSKFVDFSLPYTESGVAMLVPVKKNGSKNAWVFLKPLTWDLWVTTFLFFVFIGFVIWVLEHRINNDF RGPPSHQAGTSFWFSFSTMVFAHREKVVSNLTRTVMIIWCFVVLILTQSYTASLTSLLTVQQLQPTITNINDLSKEEPVGFQESTFIEDLLTQEGYNNRV PFNSTEQCNSLFSHGKIVAVFDEVPYVKLFLAKYCSNYAIIDLPYKTDGFGFVFPKGSPLVNDISRAVLNVTEGGGMLEMQKKWFDFKGRCPDLGASVSS ESEKLGLNSFWSLFVIAGVAALSALFAFAAMFIYEHRNSLLHDSNPSFWGRIVNLLKTFDDKDLESHTFRTERDNAEVNLVDLNNLQQQQHQQSPSTYSV HLDRDSIPQTPITPSLEARNDITPQEPAQEIETSVVSDSHPNHN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Lus10026913 [exp]	0	1
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10020245 [exp]	2.8	0.9447
AT4G10970			unknown protein		Lus10023075 [exp]	4.2	0.9436
AT3G06190		ATBPM2	BTB-POZ and MATH domain 2 (.1....		Lus10041235 [exp]	4.5	0.9375
AT5G57740		XBAT32	XB3 ortholog 2 in Arabidopsis ...		Lus10015503 [exp]	4.7	0.9169
AT1G11340			S-locus lectin protein kinase ...		Lus10013244 [exp]	5.9	0.9344
AT5G27540		MIRO1, EMB2473	embryo defective 2473, MIRO-re...		Lus10015186 [exp]	6.3	0.9282
AT1G48635		PEX3-2, PEX3	PEROXIN 3-2, peroxin 3 (.1.2)		Lus10041998 [exp]	6.7	0.9104
AT1G27340			Galactose oxidase/kelch repeat...		Lus10011354 [exp]	6.9	0.9166
AT4G17890		UBP20, AGD8	ARF-GAP domain 8 (.1.2)		Lus10004125 [exp]	7.5	0.9211
AT5G29000	GARP	PHL1	PHR1-like 1, Homeodomain-like ...		Lus10008197 [exp]	8.8	0.9292

Compare expression of checked genes

Lus10026913 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.