Gene [FLAX] | FIBexDB

Lus10026916 [FLAX]

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Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	TF class	Alias	TAIR10 short description
AT3G04720	42 / 9e-05		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-related 4 (.1)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10026915 [exp]	219 / 2e-72	AT3G04720	66 / 5e-13	HEVEIN-LIKE, pathogenesis-related 4 (.1)
Lus10020113 [exp]	209 / 3e-68	AT3G04720	52 / 6e-08	HEVEIN-LIKE, pathogenesis-related 4 (.1)
Lus10020111 [exp]	185 / 6e-59	AT3G04720	45 / 8e-06	HEVEIN-LIKE, pathogenesis-related 4 (.1)
Lus10036944 [exp]	80 / 1e-18	AT3G04720	62 / 7e-12	HEVEIN-LIKE, pathogenesis-related 4 (.1)
Lus10006244 [exp]	68 / 4e-14	AT3G04720	51 / 4e-08	HEVEIN-LIKE, pathogenesis-related 4 (.1)
Lus10003262 [exp]	55 / 8e-10	AT3G04720	154 / 2e-48	HEVEIN-LIKE, pathogenesis-related 4 (.1)
Lus10006556 [exp]	55 / 1e-09	AT3G04720	186 / 1e-60	HEVEIN-LIKE, pathogenesis-related 4 (.1)
Lus10006557 [exp]	55 / 3e-09	AT3G04720	191 / 2e-62	HEVEIN-LIKE, pathogenesis-related 4 (.1)
Lus10003265 [exp]	53 / 9e-09	AT3G04720	202 / 8e-67	HEVEIN-LIKE, pathogenesis-related 4 (.1)

Poplar homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.013G041900 [exp]	52 / 4e-08	AT3G04720	251 / 1e-85	HEVEIN-LIKE, pathogenesis-related 4 (.1)
Potri.005G054000 [exp]	50 / 1e-07	AT3G04720	238 / 9e-81	HEVEIN-LIKE, pathogenesis-related 4 (.1)
Potri.013G041700 [exp]	50 / 2e-07	AT3G04720	248 / 4e-84	HEVEIN-LIKE, pathogenesis-related 4 (.1)
Potri.013G041600 [exp]	47 / 2e-06	AT3G04720	266 / 3e-91	HEVEIN-LIKE, pathogenesis-related 4 (.1)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
CL0199 [flax] [poplar]	DPBB	PF00967 [flax] [poplar]	Barwin	Barwin family

Representative CDS sequence

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>Lus10026916 pacid=23142931 polypeptide=Lus10026916 locus=Lus10026916.g ID=Lus10026916.BGIv1.0 annot-version=v1.0

ATGAAAGGAGGGGTTATGATGATGATAGTGGCTCTGGGCGCTTGTGCACTAGTAATTATGGGGGAGGAAAACAGTGCGCACACTTGCGGCTGCGCTGATT

TCAGCCGTGACTGTGCTGATTGTGACGCTGGACGTTGCTGCGGTCCATTCAACTACTGTGGTTCAACTCCCGCTTACTGCAACATTTGTTTTTACGACAT

TTGCATTTGCTATCCGGAGCATTGTACTCTAGGCCAAACCCAGAAACTGCGTTATGATAATGCAACTGATGATGGTATTAATACCATAACTGCGACATAC

GACCGTAACTTCACCTCCACTACTGCTTCCTCTTTGACCTCTCACGATAATTTGTTGCTTGCATGGCGTTCTAATTATGGCCGTGCTACAATATGCGGAT

CATCATCTTCTGTTTCGAAGCATCATCACCATGACGGCCAATGCTTGAAGGTTACAAGTAGTGAAAACAGAAAACAAGCAGTGGTTAGAATTGTGCAGAA

TCAGCAGTACTGTAGCAATCCAAGTAATTTGGTGTTGGATTATGATGTCTTTCAACACCTCCACAGCAGCATCGGTGCTAATGGAGGAAATGCAAAAGAA

GATCAGCTACTAGTCTCCTACATGTATGTTCACTGCATGGACTACTAG

AA sequence

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>Lus10026916 pacid=23142931 polypeptide=Lus10026916 locus=Lus10026916.g ID=Lus10026916.BGIv1.0 annot-version=v1.0

MKGGVMMMIVALGACALVIMGEENSAHTCGCADFSRDCADCDAGRCCGPFNYCGSTPAYCNICFYDICICYPEHCTLGQTQKLRYDNATDDGINTITATY

DRNFTSTTASSLTSHDNLLLAWRSNYGRATICGSSSSVSKHHHHDGQCLKVTSSENRKQAVVRIVQNQQYCSNPSNLVLDYDVFQHLHSSIGANGGNAKE

DQLLVSYMYVHCMDY

DESeq2's median of ratios [FLAX]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10026916 [exp]	0	1

Lus10026916 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.