Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10720 1016 / 0 CKI2, AHK5 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) AT1G27320 158 / 2e-39 AHK3 histidine kinase 3 (.1) AT2G01830 154 / 6e-38 CRE1, AHK4, WOL1, WOL, ATCRE1 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) AT5G35750 149 / 3e-36 AHK2 histidine kinase 2 (.1) AT5G10680 107 / 7e-26 calmodulin-binding protein-related (.1) AT2G17820 113 / 3e-25 AHK1, ATHK1 histidine kinase 1 (.1) AT1G66340 96 / 5e-20 AtETR1, EIN1, ETR1 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) AT2G47430 96 / 6e-20 CKI1 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) AT2G40940 94 / 2e-19 ERS1 ethylene response sensor 1 (.1) AT5G26594 57 / 3e-09 ARR24 response regulator 24 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020115 [exp] 1489 / 0 AT5G10720 853 / 0.0 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) Lus10020114 [exp] 275 / 6e-87 AT5G10720 177 / 2e-52 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) Lus10000137 [exp] 200 / 4e-60 AT5G10720 113 / 1e-30 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) Lus10000105 [exp] 199 / 6e-60 AT5G10720 114 / 7e-31 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) Lus10012325 [exp] 174 / 5e-44 AT5G35750 1278 / 0.0 histidine kinase 2 (.1) Lus10030772 [exp] 165 / 2e-41 AT2G01830 1282 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10013250 [exp] 164 / 4e-41 AT2G01830 1282 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10006370 [exp] 158 / 3e-39 AT5G35750 1267 / 0.0 histidine kinase 2 (.1) Lus10037032 [exp] 157 / 4e-39 AT1G27320 1094 / 0.0 histidine kinase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G011400 [exp] 1337 / 0 AT5G10720 707 / 0.0 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) Potri.006G270500 [exp] 1321 / 0 AT5G10720 725 / 0.0 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) Potri.008G137900 [exp] 169 / 9e-43 AT2G01830 1390 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Potri.014G164700 [exp] 169 / 2e-42 AT5G35750 1359 / 0.0 histidine kinase 2 (.1) Potri.010G102900 [exp] 167 / 5e-42 AT2G01830 1381 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Potri.001G057400 [exp] 157 / 4e-39 AT1G27320 1384 / 0.0 histidine kinase 3 (.1) Potri.003G171000 [exp] 155 / 3e-38 AT1G27320 1425 / 0.0 histidine kinase 3 (.1) Potri.002G201500 [exp] 128 / 3e-30 AT2G40940 897 / 0.0 ethylene response sensor 1 (.1) Potri.001G204200 [exp] 122 / 2e-28 AT1G66340 1216 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.005G111700 [exp] 115 / 6e-26 AT2G17820 1435 / 0.0 histidine kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0025 [flax] [poplar] His_Kinase_A PF00512 [flax] [poplar] HisKA His Kinase A (phospho-acceptor) domain CL0304 [flax] [poplar] CheY PF00072 [flax] [poplar] Response_reg Response regulator receiver domain CL0025 [flax] [poplar] His_Kinase_A PF02518 [flax] [poplar] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Representative CDS sequence Show only first row Show all	>Lus10026917 pacid=23142879 polypeptide=Lus10026917 locus=Lus10026917.g ID=Lus10026917.BGIv1.0 annot-version=v1.0 ATGGAGAGTGTTGATGTTATTGAAGACATGGAAATGGAGATTGAGGCTCTCCCCTCTATGTGGCCCGACGACATCAACAGCGAAAAGCCTTACAATGTCG AGAAGCCCGGAGGGGAGCAGGACATGCTTGAAGAAGTTACAATTACAGTGGACGATCCATGCGTTGTCGATTTCAAGCATCTAGACGAGCTCAACAGCTA CACTGACCGAGGCTCTTCCCAGCTGGCTCACTTGATGAAGCACTGGGAATACCAGCAGGCGAATGCGGTTCGCCTGCTCAGGGAAGAGCTCGACATCCTC AGCAGGCAGAGGGAGGAAGTGGAGCTCAAGAAGTTGGAGATCATTGAGAATTTCAGGTTCCAGGAAGATTCATGTGGAGGTGACAAGAGGCCGATTTCCA TATTGGACGATGCCAATATGGAAATCTACGAGAGGATTCCCAGGAGGAAGTATGACGGGTTTGTTGTGCAGAGCAACAGAGTTGATCAGCTTGATGTCGA GTCTGACACGGTCGCATATTGGAAAGCACGGGCGGGGAATCTGGAGATGCTCCTGGAAGCTAGCGCCCACAGAGAGCAGATACTTATGGAGAAGCTGCAA GAAACCATTAAGAGTCTGGAGAGGGAGTCATCACCTGTGGAGGAGTTGTCTCAGATTCTCAAGAGAGCTGATAATTTCTTGCATTTCGTCCTCCAGAATG CTCCTGTTGTAATAGGCCATCAGGATAACGAGTTGAAATACCGGTTTATATATAACCATTTCCCCAGCTTGCATGAGCAGGACATATTGGGGAAGACAGA TGTGGAGATCTTCAATGGCGCTGGTGTTAAGGAGTCTCAAGACTTCAAGAGAGAAGTTCTTGAGAAAGGGCTGCCAGCGAAAAGAGAAATTACATTTGAA ACAGAACTATTTGGGTTAAAAACATTTCTGATATATGTAGAGCCTGTATTCAGCAAAGCAGGGGATACTATTGGTGTAAACTATATGGGAATGGATGTGA CTGATCAGGTCAGAAAAAGAGAGAAAATGGCAAAGCTTCGAGAGGAGATTGCTGTACAGAAGGCAAAGGAAACTGAACTGAATAAGACGATCCACATAAC AGAGGAAACCATGCGTGCAAAACAGATGCTAGCGACCATGTCACACGAGATAAGATCTCCACTATCTGGTGTTGTGAGCATGGCTGAGATTCTGTCCAGC ACGAAGCTGGACCGCGAGCAAAGGAACCTTCTGAATGTGATGATATCTTCGGGAGACTTGGTTCTTCAACTCATAAATGACATACTTGACTTGTCAAAAG TTGAGTCAGGTGTTATGAAGTTGGAAGCTACGAAATTCCGGCCCCGAGAAGTGGTAAAGCATGTCCTACAAACAGCTGCCGCTTCATTGCAGAAGATACT CACGCTCGAAGGACGCATAGCAGATGATGTCCCAATCGAGATCATTGGAGATGTTTTAAGGATTAGACAGATCCTTACCAACTTGATCAGTAATGCCATA AAGTTCACACATGAAGGGAAAGTGGGAATAGACCTTTATGTTATATCAGACCCTGGTTGTACAAAACCAGAAGTAAACCACCAGAAGGTACCTGTGGATC AATCATCTGCAAATGGACAAAAGGAAGAGAAATGTACATCAACATCACAGAGTTGCAACGGCCATCAAAATGGTTTTCATGATGAGAAACACGGAGATGA TGAGCCTAGAACCCTAGACAACGGAAGTACAACAGAGAGAGGAGATGAAGAGGAAGAGTGCGACATACCAGAAACAACAGTGTGGCTACGATGCGATGTT TACGACACTGGAATCGGAATACCAGACAATGCCTTACCAACTCTCTTCAAAAAGTATATGCAAGTCAGTGCAGATCATGCACGCAAATACGGTGGCACCG GTCTTGGTCTTGCAATATGCAAGCAACTGGTGGAACTGATGGGAGGGCAACTAACTGTGACGAGCCGAGTGAACCATGGCTCTACATTTACATTTGTGTT ACCATACAAAGTATCACAAGTTTGTGATTCTTCCGATGATACAGATGACCTGTCCGACATGACTGATAATGATACCGCTACCGAGGATGAAACTGCTGGT TTCTTTCAGTTCCAACCGCGGACTTTGGGATCCCTATTCTCATCTAATGGCCCCATTAGGATCCCTAAATTGGTTCCAAGTACCTTCGGTAATAATACTA ATTCTCACACACTCGGTGGGTTCATCGAGGAAAATGCACTCCCATCCAGATGTAAAGAGACAACTTCAGTTGGGGATGCCTGTTCTTCTGTGGTTGAAGT TGCCGAGAAAGCATCTGAACCTGAAAGTTCATTCGGTCAGAGTCGGAAAACTGATAATGGACACACATCTAGTGTAAGCAAGCAGTGTCGAAACGATACA AATGGTGAATCGAAGACTACTACTGCTGTTGCAGGTCCTACCAACTGCTCAGAGTCTATCAGAAGAACGAATTCCGAAGTGAGCACAAGCGGTTCTCAAG GATCATGTCTGTCAAATGGTAACACAGAAGCAAAGCCAAAGCCACAGATCCTGCTAGTTGAAGACAATAAGATCAATGTGATGGTAGCTCGATCCATGAT GAAGCAGTTAGGGCATGACATAATTGTGGTGAACAATGGAGTCGAAGCAGTGAAGGCGGTACAACGGGAACACTATGATCTCGTTCTAATGGATGTATAT ATGCCAGTTATGGATGGCCTTCAAGCTACAAGGATAATCCGTTCCTACGAGGAAACAGGAAGGTGGGATGCAGCTGTCCAAGCTGGAATTGAGCAATCAG CCACTTGCTTACAAAATGGGCATAGCTTCCATCCCAGTTCCAGAGATCATATCCCCATAGTCGCGATGACAGCAAATGCACTATCAGAGAGTGCAGAGGA ATGCTATGCAAATGGGATGGACTCGTTTGTGTCAAAACCAGTTACCCTCCAAAAGCTAAGAGATTGTATGGATGAATACTTACCTTGA
AA sequence Show only first row Show all	>Lus10026917 pacid=23142879 polypeptide=Lus10026917 locus=Lus10026917.g ID=Lus10026917.BGIv1.0 annot-version=v1.0 MESVDVIEDMEMEIEALPSMWPDDINSEKPYNVEKPGGEQDMLEEVTITVDDPCVVDFKHLDELNSYTDRGSSQLAHLMKHWEYQQANAVRLLREELDIL SRQREEVELKKLEIIENFRFQEDSCGGDKRPISILDDANMEIYERIPRRKYDGFVVQSNRVDQLDVESDTVAYWKARAGNLEMLLEASAHREQILMEKLQ ETIKSLERESSPVEELSQILKRADNFLHFVLQNAPVVIGHQDNELKYRFIYNHFPSLHEQDILGKTDVEIFNGAGVKESQDFKREVLEKGLPAKREITFE TELFGLKTFLIYVEPVFSKAGDTIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSS TKLDREQRNLLNVMISSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLQKILTLEGRIADDVPIEIIGDVLRIRQILTNLISNAI KFTHEGKVGIDLYVISDPGCTKPEVNHQKVPVDQSSANGQKEEKCTSTSQSCNGHQNGFHDEKHGDDEPRTLDNGSTTERGDEEEECDIPETTVWLRCDV YDTGIGIPDNALPTLFKKYMQVSADHARKYGGTGLGLAICKQLVELMGGQLTVTSRVNHGSTFTFVLPYKVSQVCDSSDDTDDLSDMTDNDTATEDETAG FFQFQPRTLGSLFSSNGPIRIPKLVPSTFGNNTNSHTLGGFIEENALPSRCKETTSVGDACSSVVEVAEKASEPESSFGQSRKTDNGHTSSVSKQCRNDT NGESKTTTAVAGPTNCSESIRRTNSEVSTSGSQGSCLSNGNTEAKPKPQILLVEDNKINVMVARSMMKQLGHDIIVVNNGVEAVKAVQREHYDLVLMDVY MPVMDGLQATRIIRSYEETGRWDAAVQAGIEQSATCLQNGHSFHPSSRDHIPIVAMTANALSESAEECYANGMDSFVSKPVTLQKLRDCMDEYLP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10720		CKI2, AHK5	CYTOKININ INDEPENDENT 2, histi...		Lus10026917 [exp]	0	1
AT5G10720		CKI2, AHK5	CYTOKININ INDEPENDENT 2, histi...		Lus10000105 [exp]	2.4	0.8985
AT5G14020			Endosomal targeting BRO1-like ...		Lus10035167 [exp]	2.8	0.9100
AT5G05460		AtENGase85A	Endo-beta-N-acetyglucosaminida...		Lus10017430 [exp]	4.9	0.8781
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Lus10008611 [exp]	7.1	0.8977
AT4G00710		BSK3	BR-signaling kinase 3 (.1)		Lus10030383 [exp]	10.4	0.8976
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Lus10001798 [exp]	11.2	0.8303
AT3G14000		ATBRXL2, BRX-LI...	DZC (Disease resistance/zinc f...		Lus10008459 [exp]	11.5	0.8285
AT5G15290		CASP5	Casparian strip membrane domai...		Lus10015375 [exp]	18.3	0.8604
AT5G14020			Endosomal targeting BRO1-like ...		Lus10012563 [exp]	23.8	0.8683
AT3G50150			Plant protein of unknown funct...		Lus10010065 [exp]	23.8	0.8477

Compare expression of checked genes

Lus10026917 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.