Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26680 90 / 2e-19 B3 REM17 transcriptional factor B3 family protein (.1) AT2G24690 87 / 3e-18 B3 REM11 Transcriptional factor B3 family protein (.1) AT4G00260 76 / 1e-14 B3 MEE45 maternal effect embryo arrest 45, Transcriptional factor B3 family protein (.1) AT2G24650 69 / 1e-12 B3 REM13 DNA binding;DNA binding;sequence-specific DNA binding transcription factors (.1) AT5G32460 69 / 2e-12 Transcriptional factor B3 family protein (.1) AT4G31650 64 / 8e-11 B3 REM6 Transcriptional factor B3 family protein (.1) AT4G31640 61 / 3e-10 B3 REM5 transcriptional factor B3 family protein (.1) AT2G24700 61 / 5e-10 B3 REM10 Transcriptional factor B3 family protein (.1) AT2G24645 59 / 3e-09 Transcriptional factor B3 family protein (.1) AT4G31620 57 / 9e-09 B3 REM2 Transcriptional factor B3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026265 [exp] 129 / 2e-33 AT4G31650 154 / 6e-41 Transcriptional factor B3 family protein (.1) Lus10026234 [exp] 120 / 5e-30 AT1G26680 152 / 8e-40 transcriptional factor B3 family protein (.1) Lus10026264 [exp] 112 / 2e-27 AT2G24700 174 / 2e-48 Transcriptional factor B3 family protein (.1) Lus10042406 [exp] 62 / 1e-10 AT4G31690 130 / 3e-34 Transcriptional factor B3 family protein (.1) Lus10039303 [exp] 48 / 9e-06 AT3G18990 76 / 1e-14 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10025913 [exp] 43 / 0.0002 AT3G18990 81 / 2e-18 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G147000 [exp] 49 / 4e-06 AT3G18990 258 / 3e-83 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10026921 pacid=23142842 polypeptide=Lus10026921 locus=Lus10026921.g ID=Lus10026921.BGIv1.0 annot-version=v1.0 ATGGTGCTTGATGTTATGGCTTTCGATCCGAGTTTGGTTGAGAGGAAGTATCATTTTGCTGCACCCCCACATGTCTCCGTTAAGATAGAGGCTGAACAAT TTCCAACGGATTTGGTTGAACCCAACACAGACCACTGCACTCTCGGGACACCCAGAGAGAAGAATGCAGTTAAGGCAAGTTTAGCAGGGAAATCTGGATC AGCTGGAACAAAACGGCCTGAAATTGCAAAGAAAAACCCTACGCATGGAGAAAAGAAGAGAGCTGAGGCAAGATTAGCAGGAAATACTCCAACAGCTGAG CCGAATGACCACTGCTTTGATTACCTTCCACGTAAGTTTGTGAGTGCAAATGGTATTGTGGGTAAGAGTTCCGAGACAGTTGTTGTGGATGGAAAAGGAG CAAAGTGGCCAGCAAGGTTAGTTACGCTACAGAACACAAATGCTGAAGTTAAACTGAAGGATGGTTGGAAGGAATACGTAACAGAAAACAGATTGAAATT GGGAGATAGTCTGTCTGTGGAACTAGTTCGAGGTGGAACGAATCCTGTGTTCAGAATAACTGGTTTGGGCCGAATTCCTATGGAGAATCCAAGGATGAAC GTTGAGGAGGTCAAGAAAGAACCAAATCATGAGGAATCAGCAGCTGCTGAAATGTCTTCAAGAGACAGGAGTCTCAACATCAAAGTGTCTGGTTGCGCGC TAAATCTTGAGAACGAAAAGCCAGTTCATGAAGAACCAGCACCACCAGCTGCTTTTATGTATCCACAAGATGGGACCAAAAGTTTTGTGGTTACTCTAAC GAATGTTTCTATCAAAGGAGGCTATCTGGTTATACCTCAGGAGTTTGCTGTACAAAATGGTTTAAATGTGGTGTCATGTAACGTAAGCATTTCAAACGAG GCAGGAATTCCCTATCCGGTAACGTTGAACATAATCAAAAGCGGTACAACTTACTTAGGAGGAAATGGATGGACTAAACTAGTGGAGACGAACTGCCTAA GAATTGGAGATGTCTTGAGGTTCGAACTCAACGAAGCAGGACAAAAACCTGTGATGAACTTTAAGGTGTCTTGTTTGTTTCCCTCCCCCATACCCTTTTA A
AA sequence Show only first row Show all	>Lus10026921 pacid=23142842 polypeptide=Lus10026921 locus=Lus10026921.g ID=Lus10026921.BGIv1.0 annot-version=v1.0 MVLDVMAFDPSLVERKYHFAAPPHVSVKIEAEQFPTDLVEPNTDHCTLGTPREKNAVKASLAGKSGSAGTKRPEIAKKNPTHGEKKRAEARLAGNTPTAE PNDHCFDYLPRKFVSANGIVGKSSETVVVDGKGAKWPARLVTLQNTNAEVKLKDGWKEYVTENRLKLGDSLSVELVRGGTNPVFRITGLGRIPMENPRMN VEEVKKEPNHEESAAAEMSSRDRSLNIKVSGCALNLENEKPVHEEPAPPAAFMYPQDGTKSFVVTLTNVSIKGGYLVIPQEFAVQNGLNVVSCNVSISNE AGIPYPVTLNIIKSGTTYLGGNGWTKLVETNCLRIGDVLRFELNEAGQKPVMNFKVSCLFPSPIPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26680	B3	REM17	transcriptional factor B3 fami...		Lus10026921 [exp]	0	1
AT3G61250	MYB	LMI2, ATMYB17	LATE MERISTEM IDENTITY2, myb d...		Lus10014784 [exp]	2.0	0.9141
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10021619 [exp]	6.0	0.8948
AT1G05950			unknown protein		Lus10005129 [exp]	8.5	0.8770
AT2G26520			unknown protein		Lus10021765 [exp]	13.1	0.9045
AT1G76420	NAC	NAC368, CUC3, A...	CUP SHAPED COTYLEDON3, Arabido...		Lus10030723 [exp]	13.1	0.9067
AT1G44760			Adenine nucleotide alpha hydro...		Lus10029664 [exp]	13.6	0.8620
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Lus10024603 [exp]	22.4	0.9019
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10026076 [exp]	23.5	0.9017
AT5G45650			subtilase family protein (.1)		Lus10007083 [exp]	24.4	0.8795
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10034690 [exp]	28.1	0.8780

Compare expression of checked genes

Lus10026921 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.