Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31600 452 / 4e-161 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) AT4G32272 99 / 2e-23 Nucleotide/sugar transporter family protein (.1.2) AT3G17430 61 / 3e-10 Nucleotide-sugar transporter family protein (.1) AT1G21870 54 / 4e-08 GONST5 golgi nucleotide sugar transporter 5 (.1) AT1G07290 49 / 2e-06 GONST2 golgi nucleotide sugar transporter 2 (.1) AT5G19980 49 / 2e-06 GONST4 golgi nucleotide sugar transporter 4 (.1) AT1G77610 49 / 2e-06 EamA-like transporter family protein (.1) AT2G13650 47 / 6e-06 GONST1 golgi nucleotide sugar transporter 1 (.1.2.3) AT1G48230 47 / 8e-06 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G25400 47 / 1e-05 Nucleotide-sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020119 [exp] 535 / 0 AT4G31600 530 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) Lus10038090 [exp] 94 / 9e-22 AT4G32272 410 / 1e-144 Nucleotide/sugar transporter family protein (.1.2) Lus10006645 [exp] 79 / 3e-16 AT4G32272 359 / 2e-123 Nucleotide/sugar transporter family protein (.1.2) Lus10017759 [exp] 62 / 2e-10 AT5G19980 495 / 2e-177 golgi nucleotide sugar transporter 4 (.1) Lus10033058 [exp] 61 / 3e-10 AT5G19980 492 / 2e-176 golgi nucleotide sugar transporter 4 (.1) Lus10017141 [exp] 57 / 6e-09 AT5G19980 489 / 4e-175 golgi nucleotide sugar transporter 4 (.1) Lus10018311 [exp] 57 / 6e-09 AT5G19980 478 / 8e-171 golgi nucleotide sugar transporter 4 (.1) Lus10018339 [exp] 54 / 7e-08 AT3G17430 615 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10001205 [exp] 53 / 1e-07 AT1G07290 465 / 4e-164 golgi nucleotide sugar transporter 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G009400 [exp] 466 / 8e-167 AT4G31600 447 / 3e-159 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) Potri.006G270700 [exp] 466 / 1e-166 AT4G31600 450 / 3e-160 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) Potri.006G255400 [exp] 103 / 3e-25 AT4G32272 438 / 1e-154 Nucleotide/sugar transporter family protein (.1.2) Potri.018G026600 [exp] 96 / 2e-22 AT4G32272 493 / 2e-176 Nucleotide/sugar transporter family protein (.1.2) Potri.018G127400 [exp] 96 / 2e-22 AT4G32272 431 / 4e-152 Nucleotide/sugar transporter family protein (.1.2) Potri.018G071700 [exp] 59 / 7e-10 AT5G19980 484 / 6e-173 golgi nucleotide sugar transporter 4 (.1) Potri.008G214300 [exp] 57 / 5e-09 AT3G17430 569 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.010G001700 [exp] 54 / 6e-08 AT3G17430 589 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.005G062900 [exp] 51 / 5e-07 AT2G13650 534 / 0.0 golgi nucleotide sugar transporter 1 (.1.2.3) Potri.007G106400 [exp] 49 / 2e-06 AT2G13650 513 / 0.0 golgi nucleotide sugar transporter 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF08449 [flax] [poplar] UAA UAA transporter family
Representative CDS sequence Show only first row Show all	>Lus10026922 pacid=23142963 polypeptide=Lus10026922 locus=Lus10026922.g ID=Lus10026922.BGIv1.0 annot-version=v1.0 ATGCTTGCTCACGTTGTTAATTGCAGTTTGGTTGCGGCGCTGTCATATGGGGTTGCTTCAATGGCTATGGTATTCATCAACAAGGCTATCATCATGCAGT ATTCTCACTCTATGACACTCCTCACTCTCCAACAAGTGGCTACGGCTTTGCTTATACACGTCGGTAGGAATATGGGATATACGAAATCTAGGGGACTCAC TCTCCAAACGGCCAAGAGACTTCTCCCTGTTTCTTTGTTTTACAATGCTAATGTTGCCTTTGCTCTGGCTAGCCTGAAAGGGGTTAATATTCCCATGTAT ATTGCAATCAAGAGACTCACTCCTCTTGCTGTGCTCATTGCTGGCTTCTTTGCTGGAAAGGGAAGACCTTCAACCCAGGTGACTCTTTCGGTGCTACTGA CTGCTGGAGGAGTAGTAATTGCAGCACTTGGAGATTTTTCCTTCGACTTGTTCGGTTATGGCTTGGCCTTTATCTCTGTTTTCTTCCAGACAATGTACCT TGTTTTAGTGGAGAAGTCTGGTGCAGAAGACGGGCTTTCTTCGGTTGAAATAATGTTCTACAACAGCTTTTTGTCTCTACCGTTTTTAGCATTCCTCATC ATAGTTACTCGAGAATTTCCAGACTCTTTGGTGTTATTAATTGCAAAGAGTAATTCCATGTCGTTTTTGGTGATACTCATTCTTTCTTTGGTGATGGGAA TTGTTCTCAACTACACCATGTTCTTATGCACGATTGTCAACTCAGCTCTTACAACGACCATAGTAGGTGTGCTGAAAGGTGTTGGATCCACGACGCTTGG ATTCTTCTTACTTGGAGGGGTGAAGGTGCATGGTTTGAACGTGACCGGTTTGGTGATCAACACGGCTGGTGGGGTGTGGTATTCATACGCCAAGTATCAG CAACGGAGAAGCCGGCCACCTAAGCTAACAACAGACGTGGAGGCGCATGGGAAGTGA
AA sequence Show only first row Show all	>Lus10026922 pacid=23142963 polypeptide=Lus10026922 locus=Lus10026922.g ID=Lus10026922.BGIv1.0 annot-version=v1.0 MLAHVVNCSLVAALSYGVASMAMVFINKAIIMQYSHSMTLLTLQQVATALLIHVGRNMGYTKSRGLTLQTAKRLLPVSLFYNANVAFALASLKGVNIPMY IAIKRLTPLAVLIAGFFAGKGRPSTQVTLSVLLTAGGVVIAALGDFSFDLFGYGLAFISVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLAFLI IVTREFPDSLVLLIAKSNSMSFLVILILSLVMGIVLNYTMFLCTIVNSALTTTIVGVLKGVGSTTLGFFLLGGVKVHGLNVTGLVINTAGGVWYSYAKYQ QRRSRPPKLTTDVEAHGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31600			UDP-N-acetylglucosamine (UAA) ...		Lus10026922 [exp]	0	1
AT4G31600			UDP-N-acetylglucosamine (UAA) ...		Lus10020119 [exp]	1.0	0.7970
AT3G07470			Protein of unknown function, D...		Lus10025861 [exp]	8.0	0.7355
AT2G45790		ATPMM	phosphomannomutase (.1)		Lus10009825 [exp]	8.2	0.7603
AT1G06230		GTE4	global transcription factor gr...		Lus10007096 [exp]	11.0	0.7360
AT2G32580			Protein of unknown function (D...		Lus10029975 [exp]	13.4	0.7484
AT1G76880	Trihelix		Duplicated homeodomain-like su...		Lus10018887 [exp]	13.9	0.7821
AT1G21000			PLATZ transcription factor fam...		Lus10035554 [exp]	14.3	0.7528
AT1G27200			Domain of unknown function (DU...		Lus10036676 [exp]	14.5	0.7521
AT4G35320			unknown protein		Lus10022985 [exp]	18.1	0.7493
AT1G21000			PLATZ transcription factor fam...		Lus10027735 [exp]	20.7	0.7679

Compare expression of checked genes

Lus10026922 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.