Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24610 834 / 0 ATCNGC14 cyclic nucleotide-gated channel 14 (.1) AT4G30360 786 / 0 ATCNGC17 cyclic nucleotide-gated channel 17 (.1) AT5G14870 726 / 0 ATCNGC18 cyclic nucleotide-gated channel 18 (.1) AT3G48010 702 / 0 ATCNGC16 cyclic nucleotide-gated channel 16 (.1) AT2G28260 669 / 0 ATCNGC15 cyclic nucleotide-gated channel 15 (.1) AT1G15990 628 / 0 ATCNGC7 cyclic nucleotide gated channel 7 (.1) AT5G57940 626 / 0 ATCNGC5 cyclic nucleotide gated channel 5 (.1.2.3) AT1G19780 622 / 0 ATCNGC8 cyclic nucleotide gated channel 8 (.1) AT4G30560 619 / 0 ATCNGC9 cyclic nucleotide gated channel 9 (.1.2) AT1G01340 609 / 0 ACBK1, ATCNGC10 cyclic nucleotide gated channel 10 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020122 [exp] 1302 / 0 AT2G24610 879 / 0.0 cyclic nucleotide-gated channel 14 (.1) Lus10042434 [exp] 955 / 0 AT2G24610 916 / 0.0 cyclic nucleotide-gated channel 14 (.1) Lus10026233 [exp] 954 / 0 AT2G24610 922 / 0.0 cyclic nucleotide-gated channel 14 (.1) Lus10015510 [exp] 823 / 0 AT4G30360 1004 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10023203 [exp] 821 / 0 AT4G30360 1002 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10019983 [exp] 820 / 0 AT4G30360 1000 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10039415 [exp] 702 / 0 AT5G14870 980 / 0.0 cyclic nucleotide-gated channel 18 (.1) Lus10039486 [exp] 700 / 0 AT5G14870 985 / 0.0 cyclic nucleotide-gated channel 18 (.1) Lus10002363 [exp] 687 / 0 AT3G48010 919 / 0.0 cyclic nucleotide-gated channel 16 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G097600 [exp] 829 / 0 AT4G30360 1015 / 0.0 cyclic nucleotide-gated channel 17 (.1) Potri.018G009200 [exp] 810 / 0 AT2G24610 939 / 0.0 cyclic nucleotide-gated channel 14 (.1) Potri.017G067000 [exp] 709 / 0 AT3G48010 964 / 0.0 cyclic nucleotide-gated channel 16 (.1) Potri.013G108200 [exp] 700 / 0 AT5G14870 949 / 0.0 cyclic nucleotide-gated channel 18 (.1) Potri.009G010700 [exp] 669 / 0 AT2G28260 1052 / 0.0 cyclic nucleotide-gated channel 15 (.1) Potri.018G106100 [exp] 630 / 0 AT5G57940 1030 / 0.0 cyclic nucleotide gated channel 5 (.1.2.3) Potri.014G097900 [exp] 610 / 0 AT1G01340 901 / 0.0 cyclic nucleotide gated channel 10 (.1.2) Potri.002G170000 [exp] 610 / 0 AT1G01340 909 / 0.0 cyclic nucleotide gated channel 10 (.1.2) Potri.001G043900 [exp] 602 / 0 AT1G19780 967 / 0.0 cyclic nucleotide gated channel 8 (.1) Potri.003G183000 [exp] 599 / 0 AT1G19780 893 / 0.0 cyclic nucleotide gated channel 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00027 [flax] [poplar] cNMP_binding Cyclic nucleotide-binding domain
Representative CDS sequence Show only first row Show all	>Lus10026924 pacid=23142835 polypeptide=Lus10026924 locus=Lus10026924.g ID=Lus10026924.BGIv1.0 annot-version=v1.0 ATGACGTTGGGCGGTGGCAGGCTCGTCGTCGATTGTTTGCTGCAAACAGAGGAGACGGCGTCGGAGATGAAAGGAGGAGACGCGTCGGAGATGAAGGAGG AGACGGCACCGATCGCGGAGGAGATGGAAGGAGGAGACGGCGTCGACCACGTCTCTGGGCATTTAGGTATTAGAGAAACAGGAAGCATTCTCATCATCTC TCAAAATGGAGGAGTTCAGTGGAGTCCTTTGTGCCTAGCAATTTCCGCATTCCGTTTCTGCAAATTCTGGGCAGAACATATGGAGCTGAAGAAAGAGAAA TTTTTCAATTTTATAGAACCTCAGAAGGCTCTGCCTTTGCCAACTTACAAAGCATCTGTGTTGAAAGCTGCGAGGACAAGTATAAGAAAAGTTCCCAATT TTGGGAGGTTTAAGGATTTCCATCAGAATGAAATTGTTGATCCAGGAAGTGAAACCTTCCTACAGTGGAACAGGGCTTTCCTCTTCTCTTTTCTGCTGAC ACTATTCGTTGATCCATTGTTCTTTTATCTCCCAACCATCATCCAAACAGAAGGTTCAACTTGTATGGCTATCGACTCGAAGCTGGGGATAAGCGTGACG GTTTTCAGAACCATTGCAGATGTTTCTTACCTGATGAACATAGTTTTCAAGTTCAGGACTGCTTATGTATCTCGCAGTTCAAGAGTTGTTGGTAGAGGTG AACTTGTAAAGGATCCTGAATTGATCGCATGGCGTTATTTAGGATCCGGTTTCTTCATTGATTTCATCGTAGTATTGCCTCTTCCTCAGATAATGATATG GTTTGTGATTCCTGTGATTAAAACAAGAGAGTCTGATTACACCAACAACGCCCTTGTTCTAGTTGTTCTGCTCCAGTACATACCCAGATTGTATCTCATC TTCCCATTAAGTTCACAGATAATCAAAGCTGCGGGAGTTGTGACTGAAACTGCTTGGGCTGGTGCTGCGTACAATATCGTGTTATACTTGTTGGCCAGTC ATGTGATTGGGTCAGTTTGGTATTTGTGTTCGACAGAACGGTATGCAACGTGCTGGAAATCTGTCTGCCAAAGAGATTTCGGAAGCCAAACACCTTGCTT GTCATCTTACTTGGTCTGTAGGAATCTGGAGAAACCTGATCGTAAGATATGGGCAGAGAGTACTAGAGTGTTCAGCAAGTGTGATCCAAGCAAGTCTGAT GACCCTAGTGTATTTGACTACGGACTGTTCTCGAATGCTTTGTCAAAGCAGGTTCCTTCTGCAACCTTCATTGAGAAGTATCTGTATTGCCTATGGTGGG GCATGCAAAACTTGAGTTCCTATGGCACAAATTCATCAACTACTACATTCCTTGGAGAAACTATCTTTGCCATAATTATATCTATAGTGGGTATGGTTCT CTTTGCTCATTTCGTTGGAAACATACAGACATACCTGAAATCCATCACAGCAAGGCTTGAAGAATGGCGTCTGAAGAGGAGAGACACAGAAGAGTGGATG AGACATCGCCAACTCCCTGAAAACCTGAGAGAGCATGTGAGGAGTTTCGTTCAGTATAAGTGGCTAGCAACACGTGGTGTTGACGAAAAGGCCATCTTGC GGCAATTGCCTGCTGATCTATGCCGAGACATTCAACGCCACCTTTGTTTGGACCTTGTTCGACGGGTTCCTTTGTTCTCGCAAATGGATGATCAGCTGCT AGATGCCATCTGCGAGCGATTAGTGTCATCGTTGGTTATGCAAGGGAAGTACATTGTTAGGGAAGGCGATCCAGTAACCGAGATGCTGTTTGTTATAAGA GGGAGGCTAGAGAGCACCACAACAGATGGCGGGAGGTCAGGTTTCTTCAACTCAATAGCACTGAAACCTGGAGACTTCTGCGGGGAGGAGCTCCTCGGTT GGGCGTTGCTTCCAAACTCAAACGATAGCCTGCCATCTTCGACCAGAACAGTGAAAGCAATGGAGGAAGTAGTAGAGGCGTTTGCATTGGGTGCAAATGA CCTCAAGTTTGTTGCTAACCAGTTTAGACGCCTCCACAGTAAGAAGCTGCAGCACACTTTGCGATTGTATTCGCACCATTGGAGGATATGGGGTGCTTGC TTCATTCAGACCTCGTGGCGTCGATTCAAGAGGAGGAGGATGGCAAAGAACCTGAGCATGTCAGAGTCAACGCCGTCTTTTAGAATGGTCAACGAGGAGT ACTTGGGTGATGAAACTACATTTACTCGTTCAGAACCAAAACAGATGATGGTTATGAAGAGGCTGGCTCAACAGTTTGTTCACGATGTTGAAATGCCTAC GCTGGAAAAGCCTGAAGAGCCAGATTTCACTGTAGAGGCAAGTGGCAGGGACAGGAGTAAGGTGTTACATTATTCTTATAATTGA
AA sequence Show only first row Show all	>Lus10026924 pacid=23142835 polypeptide=Lus10026924 locus=Lus10026924.g ID=Lus10026924.BGIv1.0 annot-version=v1.0 MTLGGGRLVVDCLLQTEETASEMKGGDASEMKEETAPIAEEMEGGDGVDHVSGHLGIRETGSILIISQNGGVQWSPLCLAISAFRFCKFWAEHMELKKEK FFNFIEPQKALPLPTYKASVLKAARTSIRKVPNFGRFKDFHQNEIVDPGSETFLQWNRAFLFSFLLTLFVDPLFFYLPTIIQTEGSTCMAIDSKLGISVT VFRTIADVSYLMNIVFKFRTAYVSRSSRVVGRGELVKDPELIAWRYLGSGFFIDFIVVLPLPQIMIWFVIPVIKTRESDYTNNALVLVVLLQYIPRLYLI FPLSSQIIKAAGVVTETAWAGAAYNIVLYLLASHVIGSVWYLCSTERYATCWKSVCQRDFGSQTPCLSSYLVCRNLEKPDRKIWAESTRVFSKCDPSKSD DPSVFDYGLFSNALSKQVPSATFIEKYLYCLWWGMQNLSSYGTNSSTTTFLGETIFAIIISIVGMVLFAHFVGNIQTYLKSITARLEEWRLKRRDTEEWM RHRQLPENLREHVRSFVQYKWLATRGVDEKAILRQLPADLCRDIQRHLCLDLVRRVPLFSQMDDQLLDAICERLVSSLVMQGKYIVREGDPVTEMLFVIR GRLESTTTDGGRSGFFNSIALKPGDFCGEELLGWALLPNSNDSLPSSTRTVKAMEEVVEAFALGANDLKFVANQFRRLHSKKLQHTLRLYSHHWRIWGAC FIQTSWRRFKRRRMAKNLSMSESTPSFRMVNEEYLGDETTFTRSEPKQMMVMKRLAQQFVHDVEMPTLEKPEEPDFTVEASGRDRSKVLHYSYN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24610		ATCNGC14	cyclic nucleotide-gated channe...		Lus10026924 [exp]	0	1
AT5G64460			Phosphoglycerate mutase family...		Lus10020467 [exp]	47.3	0.6423
AT1G52280		AtRABG3d	RAB GTPase homolog G3D (.1)		Lus10025790 [exp]	59.2	0.6240
AT2G32450			Calcium-binding tetratricopept...		Lus10038571 [exp]	72.8	0.6026
AT5G65550			UDP-Glycosyltransferase superf...		Lus10026410 [exp]	106.6	0.5601
AT3G27950			GDSL-like Lipase/Acylhydrolase...		Lus10008784 [exp]	223.0	0.5625

Compare expression of checked genes

Lus10026924 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.