Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18660 48 / 7e-08 AtPNP-A, PNP-A, EXLB3 plant natriuretic peptide A (.1) AT5G39310 48 / 4e-07 ATHEXPALPHA1.19, ATEXP24, ATEXPA24 EXPANSIN 24, expansin A24 (.1) AT2G03090 46 / 1e-06 ATHEXPALPHA1.3, ATEXP15, ATEXPA15 EXPANSIN 15, expansin A15 (.1) AT4G30380 45 / 1e-06 EXLB2 Barwin-related endoglucanase (.1) AT2G37640 45 / 3e-06 ATHEXPALPHA1.9, ATEXP3, ATEXPA3, EXP3 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) AT2G45110 44 / 8e-06 ATHEXPBETA1.1, ATEXPB4 expansin B4 (.1) AT5G56320 44 / 9e-06 ATHEXPALPHA1.5, ATEXP14, ATEXPA14 EXPANSIN 14, expansin A14 (.1) AT5G39280 43 / 1e-05 ATEXP23, ATHEXPALPHA1.17, ATEXPA23 EXPANSIN 23, expansin A23 (.1) AT1G69530 43 / 1e-05 ATHEXPALPHA1.2, AT-EXP1, ATEXP1, ATEXPA1, EXP1 EXPANSIN 1, expansin A1 (.1.2.3.4.5) AT5G39300 43 / 2e-05 ATHEXPALPHA1.18, ATEXP25, ATEXPA25 EXPANSIN 25, expansin A25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020129 [exp] 177 / 2e-58 AT2G18660 44 / 2e-06 plant natriuretic peptide A (.1) Lus10020128 [exp] 125 / 7e-36 ND 48 / 6e-07 Lus10020125 [exp] 92 / 1e-24 AT2G18660 63 / 2e-13 plant natriuretic peptide A (.1) Lus10020126 [exp] 86 / 4e-22 AT2G18660 57 / 7e-11 plant natriuretic peptide A (.1) Lus10026928 [exp] 80 / 1e-20 ND / Lus10020130 [exp] 72 / 1e-16 AT2G18660 70 / 2e-15 plant natriuretic peptide A (.1) Lus10026930 [exp] 72 / 4e-16 AT2G18660 69 / 6e-15 plant natriuretic peptide A (.1) Lus10020127 [exp] 68 / 2e-15 AT2G18660 50 / 1e-08 plant natriuretic peptide A (.1) Lus10031759 [exp] 67 / 9e-15 AT2G18660 107 / 1e-30 plant natriuretic peptide A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G218300 [exp] 71 / 2e-16 AT4G30380 86 / 2e-22 Barwin-related endoglucanase (.1) Potri.018G098200 [exp] 65 / 3e-14 AT4G30380 122 / 5e-37 Barwin-related endoglucanase (.1) Potri.006G176300 [exp] 57 / 2e-11 AT4G30380 165 / 6e-54 Barwin-related endoglucanase (.1) Potri.006G179300 [exp] 56 / 5e-11 AT2G18660 116 / 1e-34 plant natriuretic peptide A (.1) Potri.018G101600 [exp] 56 / 8e-11 AT2G18660 113 / 3e-33 plant natriuretic peptide A (.1) Potri.014G066300 [exp] 47 / 7e-07 AT1G65680 322 / 2e-111 expansin B2 (.1) Potri.001G001100 [exp] 45 / 2e-06 AT2G03090 375 / 5e-133 EXPANSIN 15, expansin A15 (.1) Potri.010G202500 [exp] 45 / 2e-06 AT2G39700 473 / 2e-171 expansin A4 (.1) Potri.006G249500 [exp] 44 / 4e-06 AT4G30380 61 / 1e-12 Barwin-related endoglucanase (.1) Potri.018G031901 [exp] 44 / 5e-06 AT4G30380 57 / 3e-11 Barwin-related endoglucanase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0199 [flax] [poplar] DPBB PF03330 [flax] [poplar] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Lus10026929 pacid=23142925 polypeptide=Lus10026929 locus=Lus10026929.g ID=Lus10026929.BGIv1.0 annot-version=v1.0 ATGGCGAACAACTGTCTCCTGCTCGCAGTAGTGTTACTTGTTCTCTTCTCTATTTGGCGTTCCACATCTGCACTTTACTCTGGCACTGCTGCCTTTTCAG AGTCTCCTTCTCCTCGTTCATGCTATGGGATTGACCCGCAAAACTACATGGTGGCTGCAGTAAGAGCCGACCTATATAACAATGGTGCAGGTTGCGGGGC CAAGTACACAATAACTTGCGTGGGGAGTACGGACAATCCATGCCTACCGTCGGCGCAACCTATCACGGTCACCGTAGCTGATGACTGCACACCGGAGGCG CCTGATTACGAGGAATGCCCTACTTTTGTGATGTCACAAGGTGTTTTCGCAAGAATTGCACCCCTTAATTCTGGCGTCGTCGAGGTTTCCTATCAGCTGT AA
AA sequence Show only first row Show all	>Lus10026929 pacid=23142925 polypeptide=Lus10026929 locus=Lus10026929.g ID=Lus10026929.BGIv1.0 annot-version=v1.0 MANNCLLLAVVLLVLFSIWRSTSALYSGTAAFSESPSPRSCYGIDPQNYMVAAVRADLYNNGAGCGAKYTITCVGSTDNPCLPSAQPITVTVADDCTPEA PDYEECPTFVMSQGVFARIAPLNSGVVEVSYQL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Lus10026929 [exp]	0	1
AT5G03620			Subtilisin-like serine endopep...		Lus10003254 [exp]	6.6	0.6853
AT1G62310			transcription factor jumonji (...		Lus10004603 [exp]	8.5	0.6538
AT5G12060			Plant self-incompatibility pro...		Lus10023085 [exp]	11.5	0.6534
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006693 [exp]	12.8	0.6534
AT5G18460			Protein of Unknown Function (D...		Lus10006861 [exp]	14.1	0.6534
					Lus10011218 [exp]	15.0	0.6531
					Lus10017803 [exp]	15.1	0.6929
AT2G17030			F-box family protein with a do...		Lus10022619 [exp]	16.2	0.6455
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10035616 [exp]	17.5	0.6431
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10001037 [exp]	22.1	0.6282

Compare expression of checked genes

Lus10026929 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.