Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30380 49 / 3e-07 EXLB2 Barwin-related endoglucanase (.1) AT2G18660 45 / 4e-06 AtPNP-A, PNP-A, EXLB3 plant natriuretic peptide A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026930 [exp] 85 / 1e-19 AT2G18660 69 / 6e-15 plant natriuretic peptide A (.1) Lus10020130 [exp] 81 / 2e-18 AT2G18660 70 / 2e-15 plant natriuretic peptide A (.1) Lus10042435 [exp] 62 / 7e-12 AT4G30380 101 / 2e-28 Barwin-related endoglucanase (.1) Lus10026929 [exp] 59 / 7e-11 AT2G18660 53 / 1e-09 plant natriuretic peptide A (.1) Lus10026232 [exp] 59 / 2e-10 AT4G30380 90 / 2e-23 Barwin-related endoglucanase (.1) Lus10031759 [exp] 56 / 2e-09 AT2G18660 107 / 1e-30 plant natriuretic peptide A (.1) Lus10019978 [exp] 55 / 2e-09 AT4G30380 162 / 8e-53 Barwin-related endoglucanase (.1) Lus10042436 [exp] 54 / 2e-09 AT2G18660 53 / 2e-10 plant natriuretic peptide A (.1) Lus10020126 [exp] 54 / 6e-09 AT2G18660 57 / 7e-11 plant natriuretic peptide A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G218300 [exp] 62 / 5e-12 AT4G30380 86 / 2e-22 Barwin-related endoglucanase (.1) Potri.006G176300 [exp] 54 / 4e-09 AT4G30380 165 / 6e-54 Barwin-related endoglucanase (.1) Potri.018G098200 [exp] 52 / 1e-08 AT4G30380 122 / 5e-37 Barwin-related endoglucanase (.1) Potri.006G179300 [exp] 52 / 3e-08 AT2G18660 116 / 1e-34 plant natriuretic peptide A (.1) Potri.018G101600 [exp] 50 / 8e-08 AT2G18660 113 / 3e-33 plant natriuretic peptide A (.1) Potri.006G252200 [exp] 40 / 0.0003 AT2G18660 91 / 2e-24 plant natriuretic peptide A (.1) Potri.018G031901 [exp] 40 / 0.0005 AT4G30380 57 / 3e-11 Barwin-related endoglucanase (.1) Potri.006G249500 [exp] 39 / 0.001 AT4G30380 61 / 1e-12 Barwin-related endoglucanase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0199 [flax] [poplar] DPBB PF03330 [flax] [poplar] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Lus10026931 pacid=23142910 polypeptide=Lus10026931 locus=Lus10026931.g ID=Lus10026931.BGIv1.0 annot-version=v1.0 ATGACTGCTGATTTACCCACTATATATAAAAGGCACCCTGGTGCCCAGAACAATCATCAAACCCTCAAATCAGTAGCTAATAATCACAAGAAGCTAGCTA GCTTCATAGCTTCAAACACTGCATATGCAATGAAGTTCGAAAATCGTTCGGTCTGTTTGGCGTTGTTGGTGATATCAATGCTTTTGATAATCAATTTTGA TCTACAGCTTCAGGGTGTAGCAGCAACTGGTAGGAAAGTTCCAACCCTTCCTGCCGAAAATGGAACCGCTGGCTTCTTCGACACTGCTCCCTCGAAGACG GCGTGTGAGGGGCTAAACAAGAACCAAGGCGATCTGATTGGGTCGGCTGATATTAGAGTGTTCAAAAGAGGGGAGAGTTGCGGCAAGAAGTTTGAAGTAA CTTGCATTGGCGGCGAGGACGCTACTAAGCCGAATCCGTGCAAGAAAGACAAGAAATCGGTAGTGATAAAGATAGTGGACACTTGCGAGCCAGATCCGAA GAACCCATGCCCCACTTTGCTCCTTTCCCAGAAAGCTTTCTCTTCCATCGCTAATCCTGATGCTGGTCTTGCTTCCATTTCCTTCAAACCGTCAGTTTCC TTTCTTCACTTCTTTCTATTTGCTTTTCCTGTTTTCTTGCTATTTTCCCGGCTTCTTTTAGGTGCAGAGTCCAAATTTGGAGTCAAGAGCAATGACTTAT GGATCAGATTTAAAAAGTCCGTACAAATTTCAATCATCCAAAATTTATATTTTAGATCTAACAGCTGA
AA sequence Show only first row Show all	>Lus10026931 pacid=23142910 polypeptide=Lus10026931 locus=Lus10026931.g ID=Lus10026931.BGIv1.0 annot-version=v1.0 MTADLPTIYKRHPGAQNNHQTLKSVANNHKKLASFIASNTAYAMKFENRSVCLALLVISMLLIINFDLQLQGVAATGRKVPTLPAENGTAGFFDTAPSKT ACEGLNKNQGDLIGSADIRVFKRGESCGKKFEVTCIGGEDATKPNPCKKDKKSVVIKIVDTCEPDPKNPCPTLLLSQKAFSSIANPDAGLASISFKPSVS FLHFFLFAFPVFLLFSRLLLGAESKFGVKSNDLWIRFKKSVQISIIQNLYFRSNS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30380		EXLB2	Barwin-related endoglucanase (...		Lus10026931 [exp]	0	1
					Lus10018519 [exp]	1.7	0.7052
AT5G63810		BGAL10	beta-galactosidase 10 (.1)		Lus10023977 [exp]	12.7	0.6831
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10029390 [exp]	15.1	0.6809
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10029913 [exp]	17.4	0.6809
AT2G31230	AP2_ERF	ATERF15	ethylene-responsive element bi...		Lus10022935 [exp]	17.5	0.6283
AT3G58060			Cation efflux family protein (...		Lus10016239 [exp]	18.6	0.6445
					Lus10000400 [exp]	19.5	0.6809
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Lus10026877 [exp]	21.4	0.6809
AT5G18460			Protein of Unknown Function (D...		Lus10006860 [exp]	23.1	0.6809
AT5G58840			Subtilase family protein (.1)		Lus10016483 [exp]	24.0	0.6156

Compare expression of checked genes

Lus10026931 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.