Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18660 57 / 7e-11 AtPNP-A, PNP-A, EXLB3 plant natriuretic peptide A (.1) AT4G30380 50 / 4e-08 EXLB2 Barwin-related endoglucanase (.1) AT2G45110 51 / 5e-08 ATHEXPBETA1.1, ATEXPB4 expansin B4 (.1) AT1G65681 48 / 6e-07 EXPB6 beta expansin 6 (.1) AT4G17030 46 / 3e-06 ATHEXPBETA3.1, ATEXPR1, AT-EXPR, ATEXLB1 expansin-like B1 (.1) AT5G02260 42 / 0.0001 ATHEXPALPHA1.10, ATEXP9, ATEXPA9 expansin A9 (.1) AT3G55500 39 / 0.0007 ATHEXPALPHA1.7, ATEXP16, ATEXPA16 EXPANSIN 16, expansin A16 (.1) AT1G26770 39 / 0.0009 ATHEXPALPHA1.1, AT-EXP10, ATEXP10, ATEXPA10 ARABIDOPSIS THALIANA EXPANSIN ALPHA 1.1, ARABIDOPSIS THALIANA EXPANSIN 10, expansin A10 (.1.2) AT1G20190 39 / 0.001 ATHEXPALPHA1.14, ATEXP11, ATEXPA11 EXPANSIN 11, expansin 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020131 [exp] 241 / 2e-82 AT2G18660 59 / 2e-11 plant natriuretic peptide A (.1) Lus10042436 [exp] 102 / 1e-28 AT2G18660 53 / 2e-10 plant natriuretic peptide A (.1) Lus10042435 [exp] 60 / 2e-11 AT4G30380 101 / 2e-28 Barwin-related endoglucanase (.1) Lus10026930 [exp] 60 / 4e-11 AT2G18660 69 / 6e-15 plant natriuretic peptide A (.1) Lus10026929 [exp] 58 / 4e-11 AT2G18660 53 / 1e-09 plant natriuretic peptide A (.1) Lus10020130 [exp] 58 / 1e-10 AT2G18660 70 / 2e-15 plant natriuretic peptide A (.1) Lus10026232 [exp] 58 / 1e-10 AT4G30380 90 / 2e-23 Barwin-related endoglucanase (.1) Lus10019978 [exp] 57 / 1e-10 AT4G30380 162 / 8e-53 Barwin-related endoglucanase (.1) Lus10026931 [exp] 57 / 7e-10 AT4G30380 64 / 9e-13 Barwin-related endoglucanase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G098200 [exp] 74 / 2e-17 AT4G30380 122 / 5e-37 Barwin-related endoglucanase (.1) Potri.003G218300 [exp] 68 / 1e-14 AT4G30380 86 / 2e-22 Barwin-related endoglucanase (.1) Potri.006G179300 [exp] 66 / 4e-14 AT2G18660 116 / 1e-34 plant natriuretic peptide A (.1) Potri.018G101600 [exp] 66 / 6e-14 AT2G18660 113 / 3e-33 plant natriuretic peptide A (.1) Potri.006G176300 [exp] 55 / 6e-10 AT4G30380 165 / 6e-54 Barwin-related endoglucanase (.1) Potri.018G029100 [exp] 53 / 4e-09 AT2G18660 94 / 2e-25 plant natriuretic peptide A (.1) Potri.006G252200 [exp] 50 / 2e-08 AT2G18660 91 / 2e-24 plant natriuretic peptide A (.1) Potri.006G249500 [exp] 45 / 3e-06 AT4G30380 61 / 1e-12 Barwin-related endoglucanase (.1) Potri.018G031901 [exp] 45 / 4e-06 AT4G30380 57 / 3e-11 Barwin-related endoglucanase (.1) Potri.008G088300 [exp] 42 / 8e-05 AT1G69530 335 / 3e-117 EXPANSIN 1, expansin A1 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0199 [flax] [poplar] DPBB PF03330 [flax] [poplar] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Lus10026932 pacid=23142827 polypeptide=Lus10026932 locus=Lus10026932.g ID=Lus10026932.BGIv1.0 annot-version=v1.0 ATGGCAGCTGCTACTACTACTGGTGGCCTCATCATCGTCAATTCCTGCTCTCTACCTCTTCTGGCTGCTTTCTTCGTCGCCATCTCCTTAAGCTTCACTT CTCTTGCTTCTGCTGCTGGCAACGGAACTGCTTCCTCTTACCGCCCCGATGCTACATCGGCGTGCAAAAGCCACACCGGTTCAGCATCAATCGGCCAGAC ACTGGTTGCGTTGATCGGTCAGACACTGGTTGCGATGGTTCCGAAGGCAGCGTTCAATAACGGAGCAGCGTGCGGGAGGATGTACAAGATTAGTTGCATC GGAGCTATAGACGAATACCCAAAAGAACCCTGCAAACTCAATCAGTCGGTAACGGTGACGGTTGCGAATGAGTGCGGCGGGGACGATTGTGCAACTTTTA CATTGTCCACTGACGCTTACGCTTTAATTTCCAAACCTGATGCTGGTCACATTCAGATCTCTTACAGACGGCTGGAAAACCGGTCTCGGTTAGAGGATCG GTTTAACCGAGGTCGAGGGCGTTCGGAGAACGATTAA
AA sequence Show only first row Show all	>Lus10026932 pacid=23142827 polypeptide=Lus10026932 locus=Lus10026932.g ID=Lus10026932.BGIv1.0 annot-version=v1.0 MAAATTTGGLIIVNSCSLPLLAAFFVAISLSFTSLASAAGNGTASSYRPDATSACKSHTGSASIGQTLVALIGQTLVAMVPKAAFNNGAACGRMYKISCI GAIDEYPKEPCKLNQSVTVTVANECGGDDCATFTLSTDAYALISKPDAGHIQISYRRLENRSRLEDRFNRGRGRSEND

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Lus10026932 [exp]	0	1
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Lus10037004 [exp]	6.4	0.6787
AT1G04610		YUC3	YUCCA 3 (.1)		Lus10032608 [exp]	17.7	0.6333
AT2G42040			unknown protein		Lus10021062 [exp]	27.5	0.5782
AT4G05220			Late embryogenesis abundant (L...		Lus10007636 [exp]	28.5	0.6122
AT1G18530			EF hand calcium-binding protei...		Lus10038953 [exp]	42.2	0.5698
AT4G17260			Lactate/malate dehydrogenase f...		Lus10006030 [exp]	51.0	0.5722
AT5G02930			F-box/RNI-like superfamily pro...		Lus10040452 [exp]	54.1	0.5915
AT4G16566		HINT4	histidine triad nucleotide-bin...		Lus10007467 [exp]	69.2	0.5678
AT2G44760			Domain of unknown function (DU...		Lus10020744 [exp]	72.8	0.5670
AT5G16990			Zinc-binding dehydrogenase fam...		Lus10007832 [exp]	82.7	0.5673

Compare expression of checked genes

Lus10026932 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.