Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24580 145 / 4e-40 FAD-dependent oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020132 [exp] 238 / 6e-76 AT2G24580 501 / 6e-178 FAD-dependent oxidoreductase family protein (.1) Lus10042437 [exp] 188 / 2e-56 AT2G24580 540 / 0.0 FAD-dependent oxidoreductase family protein (.1) Lus10026231 [exp] 186 / 4e-55 AT2G24580 532 / 0.0 FAD-dependent oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G008700 [exp] 169 / 4e-49 AT2G24580 569 / 0.0 FAD-dependent oxidoreductase family protein (.1) Potri.006G272800 [exp] 168 / 1e-48 AT2G24580 585 / 0.0 FAD-dependent oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01266 [flax] [poplar] DAO FAD dependent oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10026933 pacid=23142839 polypeptide=Lus10026933 locus=Lus10026933.g ID=Lus10026933.BGIv1.0 annot-version=v1.0 ATGTCACTTTGTAGCCAAGAAAAGACTGTCTTCTCTGTGGGCATGGCCCATGGGTTTCTCCTCCTGTATCCGTTTCCTGAATACTGGATTGGGGCGGCCT CTTCAAATTCTCACTCCGGCTACCGACCAATTTACGAACCCCTTCTCTGCCAGCAGCGGGGGGAAGAGCATGGACCTTCACGGCCAGCAATCCGATGTCA TAGTGGTCGGAGCTGGTATCATGGGCAGCGCCACAGCTTACCAACTCGCCAAAAGAGGCAAAACGGTAATCCTGCTGGAACAATTCGATTTCCTCCACCA CCGCGGTTCATCGCACGGCGAGTCCCGCACGATCCGAGCCGCCTACCCGGAGGACTACTACTGCGCCATGGCCGTCGAATCGTCCCGCCTGTGGGAAGAG GCGAGTCAGAAATCGGATACAAGGTCTACTTCAAATCCCCTCACTTGGATATCGGACAAGCCGGCGACAAAAGCCTCCTCGCCATCGTTTCCAGTTGCAG GAACAATTCCATCGGATGCCGGGTCCTGGACCAACGGCAAGTGGAGGAGGAATTCGCCGGCCGGGTTAGGATCCCGGAGGACTGGATCGGGGTCCGTACA GATCTCGGCGGGGTAATTAAGCCGACCAAGGCGGTTTCGATGTTCCAGACGCTGGCGTTTCAGAAGGGCGCGGTGTTGATAGATCACACGGAAGTAAAGA GGATCGCGAAAGACGAGGAGAGAGTCGGTGGCGGGGTAAAAGTGTTGATCGGGGACGGCAGCGGCGAGATCCGGGCGGACAAGTGTGTAGTAACAGCCGG AGCTTGGACGAAGAAATTGGTTAAAAAGGTGAGCGGAGTCGATTCAGCCGGTGGAGACGACGGTTTGTTATTGGTGGTAGCCGGAGGATTTTCCGGTCAT GGGTTCAAGATGGGACCGGCGGTGGGGAATGCAGTGTTTCACGGGGAGGCTAAAGGAAGAGAGGGAAGAATGCAGTGTTTCAGGATCCAGAGGTTTCAAT AG
AA sequence Show only first row Show all	>Lus10026933 pacid=23142839 polypeptide=Lus10026933 locus=Lus10026933.g ID=Lus10026933.BGIv1.0 annot-version=v1.0 MSLCSQEKTVFSVGMAHGFLLLYPFPEYWIGAASSNSHSGYRPIYEPLLCQQRGEEHGPSRPAIRCHSGRSWYHGQRHSLPTRQKRQNGNPAGTIRFPPP PRFIARRVPHDPSRLPGGLLLRHGRRIVPPVGRGESEIGYKVYFKSPHLDIGQAGDKSLLAIVSSCRNNSIGCRVLDQRQVEEEFAGRVRIPEDWIGVRT DLGGVIKPTKAVSMFQTLAFQKGAVLIDHTEVKRIAKDEERVGGGVKVLIGDGSGEIRADKCVVTAGAWTKKLVKKVSGVDSAGGDDGLLLVVAGGFSGH GFKMGPAVGNAVFHGEAKGREGRMQCFRIQRFQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24580			FAD-dependent oxidoreductase f...		Lus10026933 [exp]	0	1
AT4G35240			Protein of unknown function (D...		Lus10023949 [exp]	6.8	0.8834
AT4G30600			signal recognition particle re...		Lus10035066 [exp]	13.6	0.9150
AT2G43320			S-adenosyl-L-methionine-depend...		Lus10015953 [exp]	15.5	0.9084
AT5G47870		RAD52-2B, RAD52...	radiation sensitive 51-2, unkn...		Lus10002565 [exp]	18.6	0.8998
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Lus10000052 [exp]	21.4	0.9112
AT3G57870		SCE1A, SCE1, AH...	SUMO CONJUGATING ENZYME 1A, EM...		Lus10019328 [exp]	26.5	0.8912
AT5G56260			Ribonuclease E inhibitor RraA/...		Lus10027126 [exp]	27.3	0.8859
AT1G05560		UGT75B1, UGT1	UDP-GLUCOSE TRANSFERASE 1, UDP...		Lus10021610 [exp]	29.9	0.8906
AT4G14110		FUS7, EMB143, C...	FUSCA 7, EMBRYO DEFECTIVE 143,...		Lus10036164 [exp]	30.5	0.8809
AT2G26230			uricase / urate oxidase / nodu...		Lus10008952 [exp]	33.6	0.8911

Compare expression of checked genes

Lus10026933 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.