Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31550 373 / 1e-129 WRKY ATWRKY11, WRKY11 WRKY DNA-binding protein 11 (.1.2) AT2G24570 353 / 5e-122 WRKY ATWRKY17, WRKY17 WRKY DNA-binding protein 17 (.1) AT4G24240 178 / 4e-53 WRKY ATWRKY7, WRKY7 WRKY DNA-binding protein 7 (.1) AT2G30590 173 / 7e-51 WRKY WRKY21 WRKY DNA-binding protein 21 (.1) AT5G28650 167 / 4e-49 WRKY ATWRKY74, WRKY74 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 74, WRKY DNA-binding protein 74 (.1) AT3G04670 167 / 6e-49 WRKY ATWRKY39, WRKY39 WRKY DNA-binding protein 39 (.1.2) AT2G23320 166 / 1e-48 WRKY WRKY15 WRKY DNA-binding protein 15 (.1.2) AT2G34830 115 / 6e-29 WRKY ATWRKY35, WRKY35, MEE24 maternal effect embryo arrest 24, WRKY DNA-binding protein 35 (.1) AT4G01250 112 / 9e-29 WRKY ATWRKY22, WRKY22 WRKY family transcription factor (.1) AT1G30650 112 / 7e-28 WRKY ATWRKY14, AR411, WRKY14 WRKY DNA-binding protein 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020136 [exp] 543 / 0 AT4G31550 401 / 8e-141 WRKY DNA-binding protein 11 (.1.2) Lus10041600 [exp] 184 / 2e-55 AT2G23320 276 / 2e-91 WRKY DNA-binding protein 15 (.1.2) Lus10024864 [exp] 174 / 1e-51 AT2G30590 325 / 7e-110 WRKY DNA-binding protein 21 (.1) Lus10042538 [exp] 171 / 7e-51 AT5G28650 301 / 7e-102 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 74, WRKY DNA-binding protein 74 (.1) Lus10018776 [exp] 172 / 9e-51 AT2G30590 322 / 6e-109 WRKY DNA-binding protein 21 (.1) Lus10033857 [exp] 172 / 2e-50 AT3G04670 362 / 3e-124 WRKY DNA-binding protein 39 (.1.2) Lus10021999 [exp] 169 / 6e-50 AT5G28650 297 / 4e-100 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 74, WRKY DNA-binding protein 74 (.1) Lus10014745 [exp] 169 / 3e-49 AT3G04670 362 / 2e-124 WRKY DNA-binding protein 39 (.1.2) Lus10010053 [exp] 168 / 3e-49 AT4G24240 303 / 1e-101 WRKY DNA-binding protein 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G008500 [exp] 373 / 3e-129 AT4G31550 315 / 1e-106 WRKY DNA-binding protein 11 (.1.2) Potri.006G072400 [exp] 301 / 1e-101 AT4G31550 297 / 3e-100 WRKY DNA-binding protein 11 (.1.2) Potri.018G139300 [exp] 291 / 1e-97 AT4G31550 284 / 5e-95 WRKY DNA-binding protein 11 (.1.2) Potri.014G024200 [exp] 194 / 3e-59 AT4G24240 261 / 8e-85 WRKY DNA-binding protein 7 (.1) Potri.002G123300 [exp] 181 / 5e-54 AT4G24240 275 / 2e-90 WRKY DNA-binding protein 7 (.1) Potri.002G043500 [exp] 177 / 7e-53 AT2G30590 345 / 1e-117 WRKY DNA-binding protein 21 (.1) Potri.013G042600 [exp] 176 / 2e-52 AT3G04670 333 / 1e-113 WRKY DNA-binding protein 39 (.1.2) Potri.005G219500 [exp] 175 / 8e-52 AT2G30590 352 / 3e-120 WRKY DNA-binding protein 21 (.1) Potri.007G047400 [exp] 172 / 8e-51 AT4G24240 283 / 4e-94 WRKY DNA-binding protein 7 (.1) Potri.005G055300 [exp] 171 / 2e-50 AT3G04670 361 / 1e-124 WRKY DNA-binding protein 39 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10533 [flax] [poplar] Plant_zn_clust Plant zinc cluster domain CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10026936 pacid=23142953 polypeptide=Lus10026936 locus=Lus10026936.g ID=Lus10026936.BGIv1.0 annot-version=v1.0 ATGGCGGTGGACACGATGAGGTTTAGTAAGATGGACGACCAGATCGCGATACAGGAAGCAGCAACTCAAGGCTTGAAGAGCATGGAGCATCTGATCGGAG TCATGTCTCGCCACCAGCCTTCCAATCACATCGATTACACGGACATAACTGAACACACCGTCTCCAGATTTAAGAAAGTCATCTCCCTCCTCAACCGCAC TGGCCACGCCCGCTTCCGCCGCGGTCCTGCTCATCGTTCATCGTCTTCGTCCTCCGTCGTCGCCGCCTCATCGCCTCCGTCGTCTTCTTCCCCTCCTCCT AGGGCGATGATCCAAGTGGCTCCTCCGGTTCCGGTCTCGATCCCGGCGCCTTCCAGCTTCGTGCAGCCGCAGCCGCAGAGTTTGACTCTTGACTTCACTA AACCTAACATATTTGCCTCTAATTCCAAGAGCGTTGAGCTGGAGTTCACCAAGGATAGCTTTAGCTGCTCCTCCAACTCTTCCTTTATGTCCTCCGCAAT AACCGGTGACGGAAGCGTTTCAAACGGAAAGCTGGGATCGTCGATCTTCCTATCGCCGGCAACTGCCTCCTCCGGAAGGCCACCTCTCTCGTCGGCTCCA TACAGCAAGAAGAGGTGCCACGAGCACGTCCACTCCGAAGATCTGTCCGGAAATTTCTCCGGCTCCAACAGCGGCAAGTGCCATTGCTCTAAAAGACGAA AAAATCGGGTGAAGAAAACAATTCGGGTCCCGGCGATAAGCTCGAAGATCGCTGATATCCCAGCGGACGAGTATTCTTGGAGAAAGTACGGTCAAAAGCC GATCAAGGGCTCTCCTTACCCTAGGGGTTATTACAAGTGTAGCACGATGAGGGGGTGTCCTGCGAGGAAGCATGTGGAGAGGGCGACGGACGATCCGGCG ATGCTGATCGTCACATACGAAGGCGAGCATCGTCATGCCCAGCCGGCTTTCCAGGATAACATGGCGGCGGCTCCTTTCGCCGGAGTAGGGCTAGTTGACT CGTCAACGTAA
AA sequence Show only first row Show all	>Lus10026936 pacid=23142953 polypeptide=Lus10026936 locus=Lus10026936.g ID=Lus10026936.BGIv1.0 annot-version=v1.0 MAVDTMRFSKMDDQIAIQEAATQGLKSMEHLIGVMSRHQPSNHIDYTDITEHTVSRFKKVISLLNRTGHARFRRGPAHRSSSSSSVVAASSPPSSSSPPP RAMIQVAPPVPVSIPAPSSFVQPQPQSLTLDFTKPNIFASNSKSVELEFTKDSFSCSSNSSFMSSAITGDGSVSNGKLGSSIFLSPATASSGRPPLSSAP YSKKRCHEHVHSEDLSGNFSGSNSGKCHCSKRRKNRVKKTIRVPAISSKIADIPADEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERATDDPA MLIVTYEGEHRHAQPAFQDNMAAAPFAGVGLVDSST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31550	WRKY	ATWRKY11, WRKY1...	WRKY DNA-binding protein 11 (....		Lus10026936 [exp]	0	1
AT4G31550	WRKY	ATWRKY11, WRKY1...	WRKY DNA-binding protein 11 (....		Lus10020136 [exp]	2.6	0.9656
AT2G18670			RING/U-box superfamily protein...		Lus10015506 [exp]	3.3	0.9747
AT4G30600			signal recognition particle re...		Lus10017891 [exp]	4.9	0.9653
AT1G66880			Protein kinase superfamily pro...		Lus10028494 [exp]	5.5	0.9719
AT3G21630		LYSMRLK1, CERK1	LYSM DOMAIN RECEPTOR-LIKE KINA...		Lus10030022 [exp]	6.0	0.9684
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10033889 [exp]	7.7	0.9714
AT3G52880		ATMDAR1	monodehydroascorbate reductase...		Lus10035593 [exp]	8.5	0.9657
AT4G13420		HAK5, ATHAK5	high affinity K+ transporter 5...		Lus10025493 [exp]	8.9	0.9658
AT1G03910			unknown protein		Lus10021530 [exp]	13.0	0.9547
AT2G26230			uricase / urate oxidase / nodu...		Lus10028868 [exp]	13.4	0.9562

Compare expression of checked genes

Lus10026936 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.