Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58590 715 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G09040 338 / 1e-102 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G39530 333 / 3e-102 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G18485 315 / 2e-94 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G03580 311 / 1e-93 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G33170 312 / 3e-93 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G02330 307 / 5e-92 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G27610 305 / 2e-91 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53360 296 / 4e-89 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G16480 299 / 6e-89 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020138 [exp] 392 / 5e-133 AT3G58590 164 / 1e-46 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009913 [exp] 355 / 6e-109 AT3G09040 1114 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10032091 [exp] 323 / 8e-99 AT3G02330 925 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014594 [exp] 318 / 3e-97 AT3G02330 901 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024199 [exp] 315 / 2e-94 AT3G09040 1017 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10020139 [exp] 283 / 2e-91 AT3G58590 138 / 2e-38 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007806 [exp] 304 / 6e-91 AT3G03580 967 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016943 [exp] 301 / 5e-90 AT5G08490 924 / 0.0 SLOW GROWTH 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008967 [exp] 299 / 2e-89 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G091000 [exp] 899 / 0 AT3G58590 793 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G067500 [exp] 341 / 7e-104 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 333 / 1e-101 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G187800 [exp] 332 / 3e-100 AT3G09040 1201 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G047600 [exp] 330 / 8e-100 AT1G18485 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G129100 [exp] 330 / 3e-99 AT5G09950 1287 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G111300 [exp] 325 / 6e-99 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G129500 [exp] 325 / 2e-96 AT5G09950 1001 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G058900 [exp] 311 / 2e-92 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G067000 [exp] 305 / 2e-92 AT1G18485 500 / 8e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10026937 pacid=23142837 polypeptide=Lus10026937 locus=Lus10026937.g ID=Lus10026937.BGIv1.0 annot-version=v1.0 ATGGGGGAGTTCGTGAAATGCCACCAGCGGCTGCTATGTCTGCTAGAAGCCAGCTCAATAGTTCGTTCTCTTAATGCTACTAAATGTCTTCATGCACTCT CCATCACACTTTACGACCCGTACTGGACCCAAACCACCTTTTTGCACAACAACATCATCTCGTTATACGCTTCGGTCAGGGAGTTGTGGAATGCACGTAA GGTGTTTGACAGAATGTCGCAGAGGAACACAGCATCCTACAATTCTATGATTTCTTGTTACAGCAGATTTGACTGCTTGGATGATGCTTGTAGTACTTTT AATCAGATGATGGCATCTAGATTTAGACCTAATCAGTTCACTCTGGGGGGTCTGTTGTCGTGTGCGTCTATGGATATTAGTCGTGGGGTCAGATTGCAGG GGCTAGCGATGAAAAGCGGGTTGTTCTCTGCTGATGCTTTCGTGGGGACGTCTTTGTTGGGGCTGTTTGGAAGGTCAGATCATTTGGAAGAGGCTTTCTG TGTTTTTCAGAATATGCCAGTCAAGAGCTTGACCACTTGGAATTCAATGATATCTTGCTTTGCTACTCACGGCTTGGTTGAAGATAGTATGATTCTGTTT CGTGACCTTTTAAGTACAGAAAGTATATTATCTGAAGGCTCGTTCGTTGGTCTTTTGTCCGGATTAGTATGCGATCAAGATTTGAGATTTGGCCAGCAAG TGCATGGTTTAGCTATTAAAAATGGGTTTGACAGTAAGGTTCCAATCGCCAACAGTCTTGTTAATATGCATGTGAAATGTGGCAGCATGTCTCTGGCCGA GAAAATGTTTCAGGATGTAAAGAACAAGGATATTGTGACGTGGAATACCCTAATTGGCGGACTAGTAAGAAATGGCAATGCCGACAAAGCAGTGGAGCTT TTCAAGAAATTCTCTAAAGATCTTCTCAGGCCTAATCAGGCCACATTTGTTAATCTCATCCAGTCATATACTGCTCTAAGAATTCCGATGTTTGGGGAAG CTGTTCATGCTTTCATAATCACGAATGCTTCTGAAATGGATGCTTATGTTGGTAGTGCTCTAGTTGACTATTATGCTAAATGCAACAAGTTGGATGATGC ATACAGCTGCTTTCTTCAGATACGTGAGAAGAATGTAGTTTGCTGGAATAGTATTATTTCGGCCTTTGCTAATAAAAGCTCCCGAGTTCCTTTTTCTTTG ATCCAAGAGATGCTTCAGTTTGGTTTTCGACCTAATGAGTTTTCGTTTTCTGCTATACTTAAATCCTTATTAGAGTCAGAGCTGTGGCAAGTTCATTGCC TACTGATGAAGATGGGTTATGAAAATAATGAATATGTGTTCAGTGCCCTTCTTGCAAGCTATGGGAGGGCAGGTCTCATCCATGAAGCAACAACACTAGT CGCAGCATCTGAAATATTTGGTACGGTTCCTTCTAACACTATTGCTGGAATATGCAACAGATCAGGCCAGTACCATGAAACACTTAAGTTGCTCTCACAG CTTGAAGAACCAGATCTTGTATCTTGGAACATTGTCCTTGCTGCTTGTGCTCGCAATGGTCATTACAAAGAGGTTATTGAGCTCTTCAGACATATGCTTA TGGTTGAAATCCGTCCAGATAATTACACCTATGTCAGTCTTCTGACAGTGTGCAGTAAGCTTTGCATGGTTACCTTGGGTAGTACTATTCATGCGCTCCT TGTAAAGACAAATTTTAGTGCTTGTGATGCATTTGTTGGTAATGTGTTGATAGACATGTATGGAAGATGTGGGGAATTTCAAAGTTCTCTTAAAGTATTC CATGATATAACGGAAAATAATCTGATTACGTGGACAGTCTTGATTTCAGCGCTTGGAAATAACGGGCGTGCAGATGATGCATTAACAGTGTTCAAACAGA TGGAATCCATTGGGCATAAACCGGACAAGGTTGCTTTCACTGCTGTGCTTGCAGCTTGCAAACATGGTGGTTTAGTGAGAGAAGGGCTGGAGATACTCAA AAAAATGCATACTCATGGTATTGAACCAGATGTGGATCACTACCATTGTCTTGTAGATTTGTTAGCTAAATGTGGGTTTATCAGTGAAGCAGAGAATATA ATTGCCAGCATGCCTTTTCCACCAAGTGTCGCAATATGGCGGAGTTTTCTTGAAGGCTGCAAGAAACAAAGAGCTACAGGGGCAATGGCCCGTCTGTCTG GTTAA
AA sequence Show only first row Show all	>Lus10026937 pacid=23142837 polypeptide=Lus10026937 locus=Lus10026937.g ID=Lus10026937.BGIv1.0 annot-version=v1.0 MGEFVKCHQRLLCLLEASSIVRSLNATKCLHALSITLYDPYWTQTTFLHNNIISLYASVRELWNARKVFDRMSQRNTASYNSMISCYSRFDCLDDACSTF NQMMASRFRPNQFTLGGLLSCASMDISRGVRLQGLAMKSGLFSADAFVGTSLLGLFGRSDHLEEAFCVFQNMPVKSLTTWNSMISCFATHGLVEDSMILF RDLLSTESILSEGSFVGLLSGLVCDQDLRFGQQVHGLAIKNGFDSKVPIANSLVNMHVKCGSMSLAEKMFQDVKNKDIVTWNTLIGGLVRNGNADKAVEL FKKFSKDLLRPNQATFVNLIQSYTALRIPMFGEAVHAFIITNASEMDAYVGSALVDYYAKCNKLDDAYSCFLQIREKNVVCWNSIISAFANKSSRVPFSL IQEMLQFGFRPNEFSFSAILKSLLESELWQVHCLLMKMGYENNEYVFSALLASYGRAGLIHEATTLVAASEIFGTVPSNTIAGICNRSGQYHETLKLLSQ LEEPDLVSWNIVLAACARNGHYKEVIELFRHMLMVEIRPDNYTYVSLLTVCSKLCMVTLGSTIHALLVKTNFSACDAFVGNVLIDMYGRCGEFQSSLKVF HDITENNLITWTVLISALGNNGRADDALTVFKQMESIGHKPDKVAFTAVLAACKHGGLVREGLEILKKMHTHGIEPDVDHYHCLVDLLAKCGFISEAENI IASMPFPPSVAIWRSFLEGCKKQRATGAMARLSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58590			Pentatricopeptide repeat (PPR)...		Lus10026937 [exp]	0	1
AT3G16810		APUM24	pumilio 24 (.1)		Lus10037712 [exp]	6.1	0.8233
AT1G07615			GTP-binding protein Obg/CgtA (...		Lus10016548 [exp]	9.2	0.7744
AT4G35850			Pentatricopeptide repeat (PPR)...		Lus10003653 [exp]	12.0	0.7304
AT2G20060			Ribosomal protein L4/L1 family...		Lus10005427 [exp]	12.6	0.7594
AT3G20050		ATTCP-1	T-complex protein 1 alpha subu...		Lus10037214 [exp]	17.2	0.7584
AT2G34357			ARM repeat superfamily protein...		Lus10041231 [exp]	18.1	0.7955
AT1G79120			Ubiquitin carboxyl-terminal hy...		Lus10032172 [exp]	18.3	0.7764
AT3G16810		APUM24	pumilio 24 (.1)		Lus10016836 [exp]	18.8	0.7783
AT5G16630		ATRAD4	DNA repair protein Rad4 family...		Lus10009734 [exp]	20.3	0.6289
AT3G25970			Pentatricopeptide repeat (PPR)...		Lus10004002 [exp]	22.2	0.7425

Compare expression of checked genes

Lus10026937 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.