Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20480 679 / 0 EFR EF-TU receptor (.1) AT3G47570 664 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 654 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 651 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47110 617 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G24130 429 / 2e-134 Leucine-rich receptor-like protein kinase family protein (.1) AT5G46330 410 / 8e-126 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G44700 395 / 2e-119 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT1G17230 384 / 2e-116 Leucine-rich receptor-like protein kinase family protein (.1) AT4G08850 382 / 2e-116 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020140 [exp] 1626 / 0 AT3G47570 740 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030903 [exp] 789 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004388 [exp] 786 / 0 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10010199 [exp] 779 / 0 AT3G47570 766 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011387 [exp] 779 / 0 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011386 [exp] 769 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030845 [exp] 764 / 0 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032306 [exp] 759 / 0 AT3G47570 792 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011388 [exp] 758 / 0 AT3G47570 757 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G273001 [exp] 855 / 0 AT3G47570 635 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G007866 [exp] 832 / 0 AT3G47570 770 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102800 [exp] 811 / 0 AT3G47570 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102700 [exp] 810 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 796 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G103000 [exp] 796 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 791 / 0 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102900 [exp] 789 / 0 AT3G47570 843 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G133100 [exp] 784 / 0 AT3G47570 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G151400 [exp] 776 / 0 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10026938 pacid=23142815 polypeptide=Lus10026938 locus=Lus10026938.g ID=Lus10026938.BGIv1.0 annot-version=v1.0 ATGCAACCTCTGTTCTTGCTTCTCTGCTGTTTCCTGTCCATGGTGGGAGGAACCACCACCAACCAAACCGATGAACAAGCTTTGCTTGATTTCAGATCCA AAATATCCTCAGACCCACTTGGGATCTTCACCTCCTGGAACTCTTCCCTCCATTTCTGTCAATGGACTGGAGTTACTTGTAGTAACCTCAAAACTCAAAG AGTCATCAAGCTTACACTCAGCTCTTCCTCCCTCCATGGCACAATTTCCCAATCCATCTCCAACCTCACTTCTCTCCAGCAACTCCTTCTAGACAACAAC ACCTTCTCCGGCCACATACCACCCAAAATCGGCAGCTTGTCAAACCTCCAAAACCTCGATCTTTACTCGAATTCGCTCACTGGCCAAATCCCAAACACCA TATCCAACTGTTCGAAGCTCACTGTCTTCTATCTCGGCAGGAACAAGCTGGTGGGTAAAATTCCTGACACATTCGGCATTTCCCTGTCGAAACTCAGGAT TTTCGAAATCAGTTTCAACAACCTGACAGGGGGACTATCTTCATCTTTGGGCAATCTTTCCTCTTTGCAATCAGTTTCCACAACTTTCAACCATCTCGGA GGTACCATCCCTGAATCACTGGGCAACCTCAAGAGGCTCGATTTCCTCGCAATGGGCATGAACATGCTTACAGGAACGATCCCATTGTCGATATACAACA TTTCTTCACTGAGCGTGCTTTGCTTTCCTGAAAATCAGCTCCATGGAACAATTCCTCCTGACGTGGGGAATGTTCTCCCCAACCTCGTCGAGCTTAACAT TGGCGACAATCGCTTCACCGGAAAAATTCCTGCTTCGCTATCTAACGCCACCAACTTGGAGAGGTTTACAATCGCCATCAATGAAATTTCGGGAATCTTG CCATCATTGAACAAGCTTCATAACCTTTGGTGGTTGAGTATTTCGACTAACTTGCTCGGAACTGGATTACAAGGTGATCTCGACTTTTTTTCCACTGTCG GAAACCTTACGAGTTTACGACTGGTGTCAATAAGTTACAACAATTTCGGTGGATCGTTGCCGACCTCTGTGGTGAATCTTACTCGGCTCGAGATTTTGGC AATGGGACTAAACAACATATCTGGAAAGATTCCTGCGGGAATGTCGAATCTGAAGAACTTGGAGTGGTTAGATATGGGAGACAATCAGTTCTCAGGAAAT ATTACTGAAGAACTCGGAATGTTAACGAATTTGAAGAAATTGTATCTACAAGGAAACCGATTTTCGGGGAGTAAGATTCCATCTTCTTTAGGGAATTTAA CTCAGCTGACACATCTCTACATGCATCAGAGCTCCATCGAAGGTAGCATTCCTCGAAGCTTAGGGAACTGCCGGAATCTGTTGTCACTCGATCTCGACGG GAACAGTCTGAGTGGAGAAATCCCAGGAGAGATTTTCAACATTCAATCTTTGACTATCTATTTGGGCTTGGCAGATAATAACCTGTCAGGTTTTTTACCT AGACAAGTAGGGAATCTGAAAAATCTTGGAATCCTGAATGCTTCGTACAACATGTTGTCAGGAGAAATTCCTGCCGGAATCGGTAGCTGTGTCGGACTAG AAACGCTTTTGTTACGGAAAAATTCCTTCCAGGGAGTCATTCCTTCGTCGATGAGTTCGTTGAAAGGGATTCAGGTGCTGAGCGTCGCTTACAACAATCT TTCGGGCGAAATCCCGGAGTTTATGGTGCAGTTTCAGTCGTTGAAGGTTTTGAATCTTTCTTTCAACAACTTCCAAGGAAATGTGCCTTTGTTCAGAAAT TCCACGTCAGCTTCAGTTTCAGGAAACAGTAAACTATGTGGCGGAATTCCTGAATATAAATTGCCACCCTGCAGGACCAGCAGTACTAAATCGAAAAGAA TACTCTCGGTCGCTGAGGTCACCACAATCGTAGCGTGCGGAGTTGTATTCATCGCTCTAATTCTATCTTGTACGCTGCTCTTCTTTGTCAAGAGGAAAAA AGTGACGCCAGACGATCCGGAATGTTCAGCAAACCAAATGATGACTTACCATAGCCTGAGGAAAGCTAGTGAAGAGTTTTCTCCTCGAAATCTACTCGGA ACAGGAAGTTTTGGTTCGGTCTACAAAGGGATAGATCAAAGAAATGGGAAAGTAATTGCAGTGAAAGTGCTGAACCTTCTTAATCCTGCAGCTTCCAAGA GCTTTAGAGCAGAATGTGAGGTTTTAAGGACGGTCAGACACCGGAATCTGGTGAAGCTACTGACTGCTTGTTCCGGTGTTGATGGTGCCGGGAACGAATT CAAGGCCTTGGTTTACGAATTCATGGCGAACGGAAGTCTGGAGGAATGGTTGTACAATCCTGATGAGTCTGGAACTGGTCTGAGAAGGTTGAAGTTGGTT CAAAGGTTGAACATTGCTGTTGATGTAGCGAGCGGTCTGGAGTATCTACACCGTGGATTGAACACTCCGATAGTGCATTGTGATCTGAAGCCGAGCAATG TTCTTCTGAATGATGAAATGACGGGAGTGGTGGGGGATTTCGGGCTGGCCAGGCTATTCCCGGAAGCTAATGTTAGTAGTTATTCCTTGTCGTCCAGCAG CATTGGAGTCAGGGGAACTATCGGTTACACAGCACCAGAATATGGAATGGGGAATGAGGTTTCAAGTAGTGGAGATGTGTACAGCTACGGGATGCTGCTG CTGGAGATGCTGACAGGGAAAAGACCCACCGATGAAATGTTCAAGGAAGGCCTAAATTTGCATCGTTATGGGGAAGTGAGTTCCTGGAAGCAAGCTAGGG AGATATTGGACACAGTTGTGGTGGAGGAGATAAAAGAAGAAGAAGAAGAAGAATCATCAGACACAGAGATTACAGCTTCTCAACTTAAGGAATGCGTAGT TTCGATGCTTAGAGTTGGCGTGGTGCTTCTGTGGAGTCGCCCAGTGAGCGGATGA
AA sequence Show only first row Show all	>Lus10026938 pacid=23142815 polypeptide=Lus10026938 locus=Lus10026938.g ID=Lus10026938.BGIv1.0 annot-version=v1.0 MQPLFLLLCCFLSMVGGTTTNQTDEQALLDFRSKISSDPLGIFTSWNSSLHFCQWTGVTCSNLKTQRVIKLTLSSSSLHGTISQSISNLTSLQQLLLDNN TFSGHIPPKIGSLSNLQNLDLYSNSLTGQIPNTISNCSKLTVFYLGRNKLVGKIPDTFGISLSKLRIFEISFNNLTGGLSSSLGNLSSLQSVSTTFNHLG GTIPESLGNLKRLDFLAMGMNMLTGTIPLSIYNISSLSVLCFPENQLHGTIPPDVGNVLPNLVELNIGDNRFTGKIPASLSNATNLERFTIAINEISGIL PSLNKLHNLWWLSISTNLLGTGLQGDLDFFSTVGNLTSLRLVSISYNNFGGSLPTSVVNLTRLEILAMGLNNISGKIPAGMSNLKNLEWLDMGDNQFSGN ITEELGMLTNLKKLYLQGNRFSGSKIPSSLGNLTQLTHLYMHQSSIEGSIPRSLGNCRNLLSLDLDGNSLSGEIPGEIFNIQSLTIYLGLADNNLSGFLP RQVGNLKNLGILNASYNMLSGEIPAGIGSCVGLETLLLRKNSFQGVIPSSMSSLKGIQVLSVAYNNLSGEIPEFMVQFQSLKVLNLSFNNFQGNVPLFRN STSASVSGNSKLCGGIPEYKLPPCRTSSTKSKRILSVAEVTTIVACGVVFIALILSCTLLFFVKRKKVTPDDPECSANQMMTYHSLRKASEEFSPRNLLG TGSFGSVYKGIDQRNGKVIAVKVLNLLNPAASKSFRAECEVLRTVRHRNLVKLLTACSGVDGAGNEFKALVYEFMANGSLEEWLYNPDESGTGLRRLKLV QRLNIAVDVASGLEYLHRGLNTPIVHCDLKPSNVLLNDEMTGVVGDFGLARLFPEANVSSYSLSSSSIGVRGTIGYTAPEYGMGNEVSSSGDVYSYGMLL LEMLTGKRPTDEMFKEGLNLHRYGEVSSWKQAREILDTVVVEEIKEEEEEESSDTEITASQLKECVVSMLRVGVVLLWSRPVSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20480		EFR	EF-TU receptor (.1)		Lus10026938 [exp]	0	1
					Lus10027448 [exp]	1.4	0.9374
					Lus10005747 [exp]	2.0	0.9289
AT4G37770		ACS8	1-amino-cyclopropane-1-carboxy...		Lus10011565 [exp]	3.0	0.9208
AT4G29680			Alkaline-phosphatase-like fami...		Lus10017872 [exp]	4.0	0.8913
					Lus10005748 [exp]	4.9	0.8339
					Lus10041320 [exp]	5.0	0.8661
AT3G02100			UDP-Glycosyltransferase superf...		Lus10015753 [exp]	7.5	0.8333
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10001886 [exp]	9.5	0.8080
AT1G63060			unknown protein		Lus10001796 [exp]	10.2	0.8124
AT1G63060			unknown protein		Lus10002567 [exp]	10.6	0.8124

Compare expression of checked genes

Lus10026938 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.