Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24550 98 / 5e-24 unknown protein AT5G24890 82 / 4e-18 unknown protein AT4G31510 72 / 1e-14 unknown protein AT5G21940 51 / 3e-07 unknown protein AT3G43850 49 / 2e-06 unknown protein AT3G03170 40 / 0.0006 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020142 [exp] 283 / 4e-95 AT2G24550 113 / 9e-30 unknown protein Lus10038265 [exp] 45 / 9e-06 AT5G56550 66 / 9e-14 oxidative stress 3 (.1) Lus10025837 [exp] 45 / 2e-05 AT5G56550 65 / 2e-13 oxidative stress 3 (.1) Lus10038073 [exp] 40 / 0.0007 AT3G43850 50 / 4e-07 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G008200 [exp] 114 / 4e-30 AT5G24890 131 / 3e-37 unknown protein Potri.006G273100 [exp] 107 / 2e-27 AT5G24890 129 / 1e-36 unknown protein Potri.018G048100 [exp] 52 / 1e-07 AT5G21940 110 / 4e-29 unknown protein Potri.006G219800 [exp] 46 / 1e-05 AT5G21940 135 / 3e-38 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026939 pacid=23142914 polypeptide=Lus10026939 locus=Lus10026939.g ID=Lus10026939.BGIv1.0 annot-version=v1.0 ATGGATGTCCTGATGGGTCCAACCTTCAGCATCGACGTCTCCGCCGCTCAGGCGGCTGATTACTCAGCTCAGTCGCAGAACAACCAGCGGCGAGTGTTCT TACAACACAGGGTTTCAGCTATGCTACTGGAACCAGGAGGAGGGATAGAGGAGAGTGCTAAAGCTGGTACGATCTCGATCTCAACTATGGATCGCAAGGG CCTTGGGATGGTTAGATCTGGAAAATCTTTCGATGATTCCTCTGATAGTAGCTCTTCAGTTGGCGCTCCCGATGACAGTGAGGAGGAGGAGGAGGAAGGA GAAGAAAGTAACAGCGCTTCTTCTTCGTCCTCTTCTTCTATGAAGAAAAGTCTGGGCTCCCTCGGCTCTCTCGATGCCTTGGAAGACTCTCTGCCTGTAA AGAGGGGATTGTCAAATTACTTCACGGGGAAATCGAAATCATTCGCTAGCCTGGCAGATGCGAGCTTGGCGGTGAGTAAAGCGAAAGATCTGGAGAAGCC GGAGCATCCGTTCAACAAGCGGAGGAGAATTCTGATGGCTAACAAGTGGACGAGGAGATCCTCTTTCTACAGTTGGACAAACCCCAAGTCCATGCCGCTG CTCACCCTCAACGAGGACGAAGACGACGATGAGGAGGCGAAAGGAGGAGGAGGAGGAGAACAAGATCGGGAGGACGGTGGCCGCGAAAGCATGACGTCGT CGTCGTCGTCATCGGATAAGGATGGAGAAGAGGAGAATGAAGATCGGAAGCGGCGAGGCACGGCGGTTGGTCAAAGGAAACTGCAGGAGAGGAAATTCAA CAACAGTTTCAAGTGCCATAGCTGTTTCTCACTCACAGATCTGCAACAGCAACAACGGCTTCACCAAAATCTGCAGTGA
AA sequence Show only first row Show all	>Lus10026939 pacid=23142914 polypeptide=Lus10026939 locus=Lus10026939.g ID=Lus10026939.BGIv1.0 annot-version=v1.0 MDVLMGPTFSIDVSAAQAADYSAQSQNNQRRVFLQHRVSAMLLEPGGGIEESAKAGTISISTMDRKGLGMVRSGKSFDDSSDSSSSVGAPDDSEEEEEEG EESNSASSSSSSSMKKSLGSLGSLDALEDSLPVKRGLSNYFTGKSKSFASLADASLAVSKAKDLEKPEHPFNKRRRILMANKWTRRSSFYSWTNPKSMPL LTLNEDEDDDEEAKGGGGGEQDREDGGRESMTSSSSSSDKDGEEENEDRKRRGTAVGQRKLQERKFNNSFKCHSCFSLTDLQQQQRLHQNLQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24550			unknown protein		Lus10026939 [exp]	0	1
AT2G10950			BSD domain-containing protein ...		Lus10027706 [exp]	1.4	0.9654
AT2G24550			unknown protein		Lus10020142 [exp]	1.7	0.9611
AT1G15740			Leucine-rich repeat family pro...		Lus10008036 [exp]	2.0	0.9660
AT1G20460			unknown protein		Lus10012282 [exp]	3.7	0.9500
AT5G66930			unknown protein		Lus10019643 [exp]	4.0	0.9547
AT2G31090			unknown protein		Lus10017667 [exp]	4.5	0.9530
AT4G37880			LisH/CRA/RING-U-box domains-co...		Lus10019837 [exp]	4.6	0.9560
AT2G17020			F-box/RNI-like superfamily pro...		Lus10025093 [exp]	6.3	0.9453
AT2G37150			RING/U-box superfamily protein...		Lus10023507 [exp]	6.9	0.9600
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Lus10037550 [exp]	7.4	0.9525

Compare expression of checked genes

Lus10026939 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.