Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17510 327 / 6e-108 UCH3 ubiquitin C-terminal hydrolase 3 (.1) AT5G10700 202 / 5e-61 Peptidyl-tRNA hydrolase II (PTH2) family protein (.1) AT5G16310 71 / 7e-13 UCH1 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (.1) AT1G65650 64 / 1e-10 UCH2 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020144 [exp] 443 / 3e-153 AT4G17510 349 / 2e-123 ubiquitin C-terminal hydrolase 3 (.1) Lus10020143 [exp] 320 / 3e-106 AT5G10700 223 / 6e-75 Peptidyl-tRNA hydrolase II (PTH2) family protein (.1) Lus10005297 [exp] 83 / 6e-19 ND 40 / 5e-05 Lus10000805 [exp] 76 / 3e-16 AT1G27220 40 / 7e-05 paired amphipathic helix repeat-containing protein (.1) Lus10031062 [exp] 76 / 2e-14 AT1G65650 502 / 1e-180 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (.1) Lus10042047 [exp] 75 / 5e-14 AT1G65650 484 / 8e-173 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (.1) Lus10035444 [exp] 73 / 1e-13 AT1G65650 494 / 1e-177 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (.1) Lus10004639 [exp] 71 / 1e-12 AT1G69160 55 / 4e-08 unknown protein Lus10027494 [exp] 44 / 1e-05 ND 34 / 0.006
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G081000 [exp] 355 / 1e-118 AT4G17510 380 / 2e-135 ubiquitin C-terminal hydrolase 3 (.1) Potri.018G008000 [exp] 209 / 1e-63 AT5G10700 201 / 5e-66 Peptidyl-tRNA hydrolase II (PTH2) family protein (.1) Potri.017G075200 [exp] 70 / 1e-12 AT1G65650 489 / 1e-175 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (.1) Potri.004G130400 [exp] 69 / 3e-12 AT1G65650 483 / 7e-173 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF01088 [flax] [poplar] Peptidase_C12 Ubiquitin carboxyl-terminal hydrolase, family 1 CL0305 [flax] [poplar] PTH2 PF01981 [flax] [poplar] PTH2 Peptidyl-tRNA hydrolase PTH2
Representative CDS sequence Show only first row Show all	>Lus10026940 pacid=23142805 polypeptide=Lus10026940 locus=Lus10026940.g ID=Lus10026940.BGIv1.0 annot-version=v1.0 ATGGCGACACAGCTTCTGCTGTTCTCGCCGTATCGTTTAACTACAGCAACCTCCAGTCCTCGCCTCTTCTCGACCAAAATTAGGGCAACTCATTTCACTC TCACCCTTCGCTCACTCCAATCCAAGTCAATGAGCAGCGGCGCGCCGGAATCGGATTCAGATCCGGCGAAGAACGGCGAGGAGGAAGAAGTGTTAGTGCA ATACGTTGTGTTACGGCGAGACCTAATCGACACATGGCCGACGGGAAGCGTGGTGACACAAGGTTGCCACGCCGCCGTAGCCGCCATATGGACCAACAAG GACGACGATCACACGCTCCGGTACTGCGGACCTGACAACATCGATTCTATGCACAAGGTGACACTAGAGGTGAAAGGGGAGACGCAGATGTTGAATTTGG CTGAGAAGCTTAGGAATGGTGGGATTGCTCACAAGCTATGGATTGAACAGCCCGAGAACATACCAACCTCTATTGCCACTAAGCCTTACCCTAAATCCCA AGTGGCTTCATTTTTCAAGAAGTTGAAGCTCTGCGACGCTTACAAGGACGATAGGAACCCCCCCGAAGCAGCGACATTACTTATCGTGCTTGCGTGGGTA CGTGATATGAGGTATGAGTCGTGTGTGTTCGAAACCGACTGTCAACAAGTGGTCCTCATGGTAGCAGGTACATACGACATCATGGAATTTGGAGTTACGA TGGCACGATGTCGTGATGACATCATGGAATTTGGAGTTACGATGGCACGATGTCGTGATATTATTACAGACATATCGCTCTTCACAGTATCTTATGTTAG GAGAGATAGGAATAGGGTTGCGCACGAGCTTGATCGCCACTCTCATAGTCTAATGTTCACGAAGACGAAGGTTGGAGAAGAAGCCATTCCGTTCCGTGCT GCCGTTCCTCACTGCAACGACTCACTTCTCAAGCGGTCGCTCGTTATCAGCACAGCAAGCAGCTTCGCTCTTCCTTGCTCTAACATGGCCACCATTGACG AGGCTCCTTCTGCTAAGAGGTGGCTTCCTCTTGAAGCTAATCCTGATGTTATGAACCAGTTCATTTGGGGCCTAGGCCTTTCGGAGAGTCAGGCTGAGTG CTATGATGTCTATGGTTTGGATGAGGAACTCCTGGCTATGGTTCCACAGCCTGTCCTTGCAGTCATCTTTCTCTATCCGCTAACTCCACAGCAATTTGGG CGTTTAGACTTTAGAACTAAAATCGCTTGTTCTTGTGATAGATTTGAGAGTGTATTTATATCCGTGAATGCTGATGTTAAGAACCTTCATTTGCTTTTGC TTTTCCAGTCTGAACAAGAGAGACTGCAGCAAGAAGGTGTTGTTAAGGAACCTAACGAGAAGGTTTATTTCATGAAACAAACTGTTGGAAATGCCTGTGG AACCATAGGCCTTCTTCATGCTGTAGGGAACATCAGGTCAAACATCAATCTGCTTGAGGGATCATTCTTAGACCGACTCTTCAAATCAACAGCCAGCATG GACCCAATGCAGCGTGCAAGGTTCCTTGAGAATGACCGAGAAATGGAAACTGCTCATTCTGTTGCTGCTACAGGCGGTGAAACTGAGGCATCAGACGATG TCAACACTCATTTTATCTGCTTTGTCTGTGTGGATGGTGAACTGTATGAGCTTGATGGGAGAAAGGCAGGACCCGTATTGCATGGCCCGTCATCACCAGA CACCTTGTTGCAGGATGCAGGTAAAGTGATAAAAGGGATGATCCAGAAGAATCCAGAGTCGCTCAACTTCAACGAGGTGGCATTTGGGTTCATTGTTATG GATACCCAAAGGCAAAACTACGATGGTGGGAATGACACTTTTTCTGCCCATCGTCGATCATTGCGGGAGAAAGAGCTATGCTATCCTGGAAGCTACGGTT TACACAGCTCAGAGCATGTCCCCAACTATATCTACTCGGATTGCATCTCCCATGTTAACATGATCAACATATGGCCTTTATTAATGCACAGACCTCCTTG TGCCCCACATCGCAACAATCAAACTGCCGATTGGGTAGCCAAATCAACCCGTGATATCATTGGCAGTGTAGCCCTGTTATTTTAG
AA sequence Show only first row Show all	>Lus10026940 pacid=23142805 polypeptide=Lus10026940 locus=Lus10026940.g ID=Lus10026940.BGIv1.0 annot-version=v1.0 MATQLLLFSPYRLTTATSSPRLFSTKIRATHFTLTLRSLQSKSMSSGAPESDSDPAKNGEEEEVLVQYVVLRRDLIDTWPTGSVVTQGCHAAVAAIWTNK DDDHTLRYCGPDNIDSMHKVTLEVKGETQMLNLAEKLRNGGIAHKLWIEQPENIPTSIATKPYPKSQVASFFKKLKLCDAYKDDRNPPEAATLLIVLAWV RDMRYESCVFETDCQQVVLMVAGTYDIMEFGVTMARCRDDIMEFGVTMARCRDIITDISLFTVSYVRRDRNRVAHELDRHSHSLMFTKTKVGEEAIPFRA AVPHCNDSLLKRSLVISTASSFALPCSNMATIDEAPSAKRWLPLEANPDVMNQFIWGLGLSESQAECYDVYGLDEELLAMVPQPVLAVIFLYPLTPQQFG RLDFRTKIACSCDRFESVFISVNADVKNLHLLLLFQSEQERLQQEGVVKEPNEKVYFMKQTVGNACGTIGLLHAVGNIRSNINLLEGSFLDRLFKSTASM DPMQRARFLENDREMETAHSVAATGGETEASDDVNTHFICFVCVDGELYELDGRKAGPVLHGPSSPDTLLQDAGKVIKGMIQKNPESLNFNEVAFGFIVM DTQRQNYDGGNDTFSAHRRSLREKELCYPGSYGLHSSEHVPNYIYSDCISHVNMINIWPLLMHRPPCAPHRNNQTADWVAKSTRDIIGSVALLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17510		UCH3	ubiquitin C-terminal hydrolase...		Lus10026940 [exp]	0	1
AT2G16860			GCIP-interacting family protei...		Lus10027464 [exp]	2.2	0.9188
AT1G09150			pseudouridine synthase and arc...		Lus10015197 [exp]	2.4	0.9110
AT2G45520			unknown protein		Lus10015859 [exp]	5.5	0.9004
AT1G43860			sequence-specific DNA binding ...		Lus10029749 [exp]	5.5	0.9064
AT5G10700			Peptidyl-tRNA hydrolase II (PT...		Lus10020143 [exp]	6.9	0.8864
AT3G56210			ARM repeat superfamily protein...		Lus10010218 [exp]	7.4	0.8886
AT3G02860	C2H2ZnF		zinc ion binding (.1.2)		Lus10015686 [exp]	7.5	0.8983
AT1G43860			sequence-specific DNA binding ...		Lus10042780 [exp]	8.0	0.9014
AT1G20770			unknown protein		Lus10013217 [exp]	10.8	0.8909
AT5G15220			Ribosomal protein L27 family p...		Lus10007170 [exp]	12.6	0.8896

Compare expression of checked genes

Lus10026940 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.