Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24870 193 / 4e-55 RING/U-box superfamily protein (.1.2) AT5G10650 180 / 2e-50 RING/U-box superfamily protein (.1.2) AT4G31450 152 / 3e-40 RING/U-box superfamily protein (.1) AT1G17970 100 / 5e-23 RING/U-box superfamily protein (.1) AT3G15070 100 / 1e-22 RING/U-box superfamily protein (.1.2) AT1G53190 100 / 3e-22 RING/U-box superfamily protein (.1.2) AT5G42940 96 / 1e-20 RING/U-box superfamily protein (.1) AT2G15530 96 / 1e-20 RING/U-box superfamily protein (.1.2.3.4) AT4G34040 93 / 7e-20 RING/U-box superfamily protein (.1) AT1G73760 91 / 7e-20 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020145 [exp] 691 / 0 AT4G31450 224 / 4e-67 RING/U-box superfamily protein (.1) Lus10042443 [exp] 442 / 7e-151 AT5G10650 242 / 2e-73 RING/U-box superfamily protein (.1.2) Lus10026226 [exp] 359 / 4e-119 AT5G10650 200 / 6e-58 RING/U-box superfamily protein (.1.2) Lus10013497 [exp] 104 / 3e-25 AT1G73760 199 / 1e-62 RING/U-box superfamily protein (.1) Lus10007967 [exp] 103 / 1e-24 AT1G73760 188 / 8e-58 RING/U-box superfamily protein (.1) Lus10021722 [exp] 103 / 3e-24 AT1G17970 159 / 1e-45 RING/U-box superfamily protein (.1) Lus10010372 [exp] 100 / 6e-22 AT5G42940 353 / 2e-112 RING/U-box superfamily protein (.1) Lus10034644 [exp] 95 / 8e-22 AT1G17970 139 / 3e-39 RING/U-box superfamily protein (.1) Lus10024810 [exp] 97 / 4e-21 AT5G42940 316 / 4e-98 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G274700 [exp] 337 / 2e-109 AT5G24870 263 / 4e-81 RING/U-box superfamily protein (.1.2) Potri.018G005600 [exp] 320 / 6e-103 AT5G24870 284 / 6e-89 RING/U-box superfamily protein (.1.2) Potri.005G139900 [exp] 109 / 4e-25 AT4G34040 160 / 1e-41 RING/U-box superfamily protein (.1) Potri.007G045500 [exp] 108 / 6e-25 AT4G34040 163 / 1e-42 RING/U-box superfamily protein (.1) Potri.012G053800 [exp] 100 / 7e-23 AT1G73760 271 / 2e-88 RING/U-box superfamily protein (.1) Potri.015G043900 [exp] 100 / 1e-22 AT1G73760 258 / 2e-83 RING/U-box superfamily protein (.1) Potri.002G124300 [exp] 100 / 7e-22 AT5G42940 377 / 3e-121 RING/U-box superfamily protein (.1) Potri.001G304900 [exp] 98 / 2e-21 AT4G34040 370 / 4e-118 RING/U-box superfamily protein (.1) Potri.011G097100 [exp] 97 / 5e-21 AT1G53190 372 / 2e-123 RING/U-box superfamily protein (.1.2) Potri.001G373700 [exp] 96 / 8e-21 AT1G53190 354 / 1e-116 RING/U-box superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10026941 pacid=23142883 polypeptide=Lus10026941 locus=Lus10026941.g ID=Lus10026941.BGIv1.0 annot-version=v1.0 ATGGATGACTACTCCAGTAAGAGGCCTGACGGCCTTTTGGTCTCTAGGAAAGGTTCTTTGGCTGTTCTACGAGACACTGTCAATAACAAAGATCGCAATG GTCAGTTTTGCACTCGAATTGGCTGCAGTGGAAGAATGAACTCTGCAAAAGGTACACAACTCAACAACTCTGGCAAAGCCCAATCCTCAAGGACATCTGT TCGGTCTTCCTCTAGTGGAAAGGAAATCATTGGAAGTTCCTCCAGGACTTATTCACCAGTTAACAGTGCTAGGAAATCCTTCCCCGAATCCCGGAAGAAA TCATCTTCCCAGGTAGAACCGGATTCTTCTGAGAGTGCTAGCACTCAGGATGAGCCTGATGTTCAGGAACTTGAATGTACCTCCAGGAAGCTACATAAAG GAAATCATCCTGCTTCTATTGACACACACAAACTTGAGGTAGCCTCTAAGCAAATGGGAAGCTCAAGACTAAGTACATGTTCCCATGGAGATTTTAATCA GAAGTCAATATCAGGCAATCCACATACTATAGGTAGTAGCTCTTCTACTTCTCTGTCATCAAAGAGCACAGTCCAAGGAAGACGGTCAAATGTGAGCAAG AATGGTCTAAAGAATTTTAGGTGCAATTCGGTGTCCGATGTTGTGTCTTCAAGTTCAACATCACCAGACTCGAACGTTATGAAAAAGGATGCATTAAAGA AAAGAGCCTCGATTGGAGAGAGTAGTACCACTGGCAGGGGGAAAAGGATGACTGGCTCAGCTCCACCAGGGGAAAAGAATTCTGGTGTCTCCATTTTGGA TTCACGGGCCAGAAGTGGACCTCCTATCAGGGATAATCCCGTGTCGTCTGTTAGGACTAGAAGATCTGTAAATAGTTACAATTACAACAGAGCTCAAGGG ACTAGAAACAATATATCTGTAAGCGAGACCCTTGCTGTGGTTTCTGAAGTTCCGCAACATGATCAGAGCACTGATCTGAGTAGCCCTACTTCATCGCAGC AGTTTTTTGTGGAACCCTCCCTAGGGCGTCCTTCTTATAGTCGGTCTGGCAGTAGCAGTGGAAGCACTCAAGGTATCCGGCCATCTAGTCCTGCAGAAAT AAGCAACATGAGGTCCTTATTGAACAGGGAGAATTTCAGACGCTACAACATGGATGGGATAGCTGAGGTACTATTGGCACTTGAGAGGATTGAACAACAA GATGAAGACCTAACATATGAGGAACTATTGGCTTTAGAGGACAGAATGGGTACTGTGAGTACAGCAGTGAAGGAGGACGAGTTGTCAGAATGCGTCAAGA CTGGCATCTATCAGTCAGTATCCACAGAGGACTCATTTAGGAACATGAGTTCAGATATGGAGGATATGAAATGCAGTATCTGCCAAGAGGAGTATGCGAA TGAAGAGGAGTTGGGGGGGTTACGATGCGAGCATAAGTATCATTTGAACTGCATACAGCAATGGTTAAGGGTGAAGAACTGGTGCCCAGTTTGTAAGACG TCAGCAGTGTCAGAGCCTTCCTCATCACACACTGACTCTTGA
AA sequence Show only first row Show all	>Lus10026941 pacid=23142883 polypeptide=Lus10026941 locus=Lus10026941.g ID=Lus10026941.BGIv1.0 annot-version=v1.0 MDDYSSKRPDGLLVSRKGSLAVLRDTVNNKDRNGQFCTRIGCSGRMNSAKGTQLNNSGKAQSSRTSVRSSSSGKEIIGSSSRTYSPVNSARKSFPESRKK SSSQVEPDSSESASTQDEPDVQELECTSRKLHKGNHPASIDTHKLEVASKQMGSSRLSTCSHGDFNQKSISGNPHTIGSSSSTSLSSKSTVQGRRSNVSK NGLKNFRCNSVSDVVSSSSTSPDSNVMKKDALKKRASIGESSTTGRGKRMTGSAPPGEKNSGVSILDSRARSGPPIRDNPVSSVRTRRSVNSYNYNRAQG TRNNISVSETLAVVSEVPQHDQSTDLSSPTSSQQFFVEPSLGRPSYSRSGSSSGSTQGIRPSSPAEISNMRSLLNRENFRRYNMDGIAEVLLALERIEQQ DEDLTYEELLALEDRMGTVSTAVKEDELSECVKTGIYQSVSTEDSFRNMSSDMEDMKCSICQEEYANEEELGGLRCEHKYHLNCIQQWLRVKNWCPVCKT SAVSEPSSSHTDS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24870			RING/U-box superfamily protein...		Lus10026941 [exp]	0	1
AT5G09640		SNG2, SCPL19	SINAPOYLGLUCOSE ACCUMULATOR 2,...		Lus10007731 [exp]	1.4	0.9628
AT4G31450			RING/U-box superfamily protein...		Lus10020145 [exp]	1.7	0.9542
AT5G18270	NAC	ANAC087	Arabidopsis NAC domain contain...		Lus10026879 [exp]	2.8	0.9493
AT5G54080		HGO	"homogentisate 1,2-dioxygenase...		Lus10028135 [exp]	4.4	0.9372
AT5G49710			unknown protein		Lus10015965 [exp]	4.5	0.9552
AT5G46180		DELTA-OAT	ornithine-delta-aminotransfera...		Lus10038510 [exp]	4.6	0.9468
AT1G27980		DPL1, ATDPL1	dihydrosphingosine phosphate l...		Lus10003129 [exp]	5.5	0.9309
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10020360 [exp]	5.5	0.9479
AT1G56290			CwfJ-like family protein (.1)		Lus10021219 [exp]	7.3	0.9477
AT1G73280		SCPL3	serine carboxypeptidase-like 3...		Lus10018667 [exp]	8.7	0.9401

Compare expression of checked genes

Lus10026941 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.