Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24530 345 / 2e-116 unknown protein AT4G31440 300 / 4e-99 unknown protein AT2G14850 166 / 2e-48 unknown protein AT4G33890 165 / 1e-47 unknown protein AT5G67410 113 / 2e-28 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020146 [exp] 767 / 0 AT2G24530 346 / 4e-117 unknown protein Lus10042444 [exp] 528 / 0 AT2G24530 386 / 9e-133 unknown protein Lus10026225 [exp] 477 / 8e-169 AT2G24530 347 / 1e-117 unknown protein Lus10011423 [exp] 188 / 2e-56 AT4G33890 294 / 3e-98 unknown protein Lus10002119 [exp] 181 / 1e-53 AT4G33890 297 / 2e-99 unknown protein Lus10011422 [exp] 157 / 9e-44 AT2G14850 278 / 5e-92 unknown protein Lus10002120 [exp] 71 / 7e-15 AT2G14850 112 / 2e-31 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G005700 [exp] 470 / 1e-165 AT2G24530 443 / 8e-155 unknown protein Potri.006G274800 [exp] 462 / 2e-162 AT2G24530 415 / 1e-143 unknown protein Potri.009G090500 [exp] 226 / 8e-71 AT4G33890 305 / 4e-102 unknown protein Potri.001G296300 [exp] 223 / 2e-69 AT4G33890 325 / 2e-110 unknown protein Potri.001G037500 [exp] 222 / 3e-69 AT2G24530 236 / 2e-74 unknown protein Potri.003G187400 [exp] 216 / 5e-67 AT2G24530 229 / 7e-72 unknown protein Potri.009G090400 [exp] 206 / 7e-63 AT4G33890 318 / 2e-107 unknown protein Potri.001G296200 [exp] 195 / 7e-59 AT4G33890 295 / 3e-98 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026942 pacid=23142821 polypeptide=Lus10026942 locus=Lus10026942.g ID=Lus10026942.BGIv1.0 annot-version=v1.0 ATGCATCCTCAGCACAGCTCCAGAATTGATTTGGCTGAGCTGAAAACTCAGATAGTGAAGAAGATTGGGGCTGATAGGTCAAAGAAGTATTTCTACAACT TGAATAGGTTTCTCAGCCAGAGGCAAACTAAGAGTGATTTCGACAAGTCTTGCTTTCGCTTACTTGGTAGGGAGAATCTGCCCCTGCACAATCAGCTTAT TCGGGCAATACTCAAGAATTCATGCCTTGCTAAGACACCTCCACCAACTCATGACGCTGTGGGTCCCACTAAATCTCAGATTCTGACACTCAAAACTTCT CCGGGCACGGAAGATGTCGATGAACACAGTGGGGTACTTCTTCCAAATCAGAATCACACTGCATCCACCATTTGGTCCAATGGGGTTTTGCCCGTATCCC CTCGGAAAATTAGGTCAGGCATGCGTGAAAGGAAGCTTAGAGATCGGCCTAGCCCACTTGGACCAAATGGGAAAGTTGAGAATGGTGGAGCTAAGATTGT CGCGGACAATGGGGATTTCATTCCTTGTGATTATCAGAGACCGATGCAGCAGCTTCAACCAGTTGCCTCACAACCTCAGAATGAAGGGGAAGCCTTGGTT CAGCGATCCACGTTGATTGAAGAGGACAAAGAGGTTGACAACATGGCCTTCTCTAGAAGTCATGTGCTCGCCCCGCTTGGAATTCCATCTTCCTTGCCTA GCTTTTCCGGGGGCCGCAAAGCTACATGTTCTGATGAATTCGATATATGCTACAACAGTGGTGTCTTGTCAGATACAGAGGCGCTGAAAAAACGTATGGA GCAGATTGCTATTTCGCAAGGTCTGGGAGGAGTTTCGATGGAATGTGCGAATACGTTAAATAACATGTTAGATGTGTACTTGAAGAGGTTGGTGAAATCT TGTGTTGACCTGGTTGGAACAAGAGCTCATGATAGTAAGAGGAAGCAGCCTGGCATCAAACAGCAGGTTCCTGGGAAAGTTACCAATGGATTATGGCCTA GTAATCACATGCACATGCATAATAGCAGTGGATCCTTCGAAATCTCGCAAGAACAAAGGCCACCATGGTGTTCAATATCTCTACTTGATTTCAAAGTCGC CATGGAGTTAAATCCACAGCAGCTGGGTGAAGATTGGCCGTTGCTGATGGAGAGAATATGTATGCATTCGTTTGAGGATTAA
AA sequence Show only first row Show all	>Lus10026942 pacid=23142821 polypeptide=Lus10026942 locus=Lus10026942.g ID=Lus10026942.BGIv1.0 annot-version=v1.0 MHPQHSSRIDLAELKTQIVKKIGADRSKKYFYNLNRFLSQRQTKSDFDKSCFRLLGRENLPLHNQLIRAILKNSCLAKTPPPTHDAVGPTKSQILTLKTS PGTEDVDEHSGVLLPNQNHTASTIWSNGVLPVSPRKIRSGMRERKLRDRPSPLGPNGKVENGGAKIVADNGDFIPCDYQRPMQQLQPVASQPQNEGEALV QRSTLIEEDKEVDNMAFSRSHVLAPLGIPSSLPSFSGGRKATCSDEFDICYNSGVLSDTEALKKRMEQIAISQGLGGVSMECANTLNNMLDVYLKRLVKS CVDLVGTRAHDSKRKQPGIKQQVPGKVTNGLWPSNHMHMHNSSGSFEISQEQRPPWCSISLLDFKVAMELNPQQLGEDWPLLMERICMHSFED

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24530			unknown protein		Lus10026942 [exp]	0	1
AT1G06230		GTE4	global transcription factor gr...		Lus10033624 [exp]	3.9	0.9074
AT2G24530			unknown protein		Lus10020146 [exp]	5.3	0.8697
AT2G47330			P-loop containing nucleoside t...		Lus10037527 [exp]	8.1	0.8889
AT1G06230		GTE4	global transcription factor gr...		Lus10033623 [exp]	8.5	0.8875
AT1G50410			SNF2 domain-containing protein...		Lus10041008 [exp]	10.7	0.8725
AT2G32010		CVL1	CVP2 like 1 (.1.2)		Lus10039352 [exp]	11.0	0.8424
AT4G02560	HD	LD	luminidependens, Homeodomain-l...		Lus10009816 [exp]	11.4	0.9013
AT2G20310		RIN13	RPM1 interacting protein 13 (....		Lus10014249 [exp]	14.2	0.7693
AT3G52250	MYB		Duplicated homeodomain-like su...		Lus10023504 [exp]	29.4	0.8685
AT3G52250	MYB		Duplicated homeodomain-like su...		Lus10040386 [exp]	30.8	0.8640

Compare expression of checked genes

Lus10026942 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.