Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10710 361 / 1e-125 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026945 [exp] 583 / 0 AT5G10710 404 / 8e-142 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G005900 [exp] 462 / 2e-165 AT5G10710 395 / 1e-138 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09496 [flax] [poplar] CENP-O Cenp-O kinetochore centromere component
Representative CDS sequence Show only first row Show all	>Lus10026943 pacid=23142826 polypeptide=Lus10026943 locus=Lus10026943.g ID=Lus10026943.BGIv1.0 annot-version=v1.0 ATGCTGAAGAGTCGCTTAAGAAAAGGCAAAAGAAGAACCCTTTTTCAGGGGACTCTTCTCGTCGGGGATTCTGACAAGATGATATTTGAACGTCTACAGA AAGAATTTGAAGCTGCAAGAGCATCTCAAACACAAGAAGTCTATCTTGATGGTGAAGAATGGAATGATGGGCTATTGGCAACTATCAGAGAAAGGGTTCA CATGGAGGCTGACAGGAAGGCAATGGCAGCAGAACCTAATAATATGTCAGCTAATCATGCTGAAGAGAAAATCACATATAAAGTTGGTAACAAGGTGATT TGTTGCTTGGAAGGAGCCAGGATTGGCATACAATATGAAACAACTTTTGCAGGTGAACCCTGTGAGCTATATCATTGTGTGCTTGAAAGCCGGTCATTTC TTGAAAAAATGACTGTCCCTGAGCATACTGTTCCATTTTTTCTGCCTATAAGAGATGCGGAAAATGATCTTCTTTCTTCCAATGCTATGGCAAGATTTTT CATCTCTAGATTTATAGATTTTGTCGGAGAACTCCTGCAGTCTTATGTGGAGAGAAGAGAGCAGGTCAGGATTCTTAAGGAGCTGTATGGAAATCAAATT GGAGAACTGTATCACAGCCTGCCGTACCACTTGATAGAATTTGTTCTAGATGATTTTGATTGCAAAGTAACTGTAAGTCTCAGATACTCAGAACTTGTTG CTGTGCTTCCAAGTCGGGTCAGAGTGTTTGCATGGCCAATAAACCAATTCAAGAAATCTGTTGCCATGGGAAGTCACCCTAATCCAACTCGATTATCTTA TGCGGAGGAAGCTATGCAAAATATGACCTTGCCAGAAGCTTATGCGGAGATGGTACTAAATCTGCCACAAGCCTTGCAGCAAGTGGTTCAGGATAGCAGT CCTTTCTAG
AA sequence Show only first row Show all	>Lus10026943 pacid=23142826 polypeptide=Lus10026943 locus=Lus10026943.g ID=Lus10026943.BGIv1.0 annot-version=v1.0 MLKSRLRKGKRRTLFQGTLLVGDSDKMIFERLQKEFEAARASQTQEVYLDGEEWNDGLLATIRERVHMEADRKAMAAEPNNMSANHAEEKITYKVGNKVI CCLEGARIGIQYETTFAGEPCELYHCVLESRSFLEKMTVPEHTVPFFLPIRDAENDLLSSNAMARFFISRFIDFVGELLQSYVERREQVRILKELYGNQI GELYHSLPYHLIEFVLDDFDCKVTVSLRYSELVAVLPSRVRVFAWPINQFKKSVAMGSHPNPTRLSYAEEAMQNMTLPEAYAEMVLNLPQALQQVVQDSS PF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10710			unknown protein		Lus10026943 [exp]	0	1
AT5G06810			Mitochondrial transcription te...		Lus10018548 [exp]	3.9	0.6977
AT5G64320			Pentatricopeptide repeat (PPR)...		Lus10039056 [exp]	5.3	0.7156
AT2G16370		THY-1	thymidylate synthase 1 (.1)		Lus10023549 [exp]	7.6	0.7212
AT3G01610		CDC48C, EMB1354	embryo defective 1354, cell di...		Lus10018508 [exp]	17.7	0.5714
AT4G38120			ARM repeat superfamily protein...		Lus10033267 [exp]	23.2	0.6555
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10042748 [exp]	28.0	0.6430
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10000831 [exp]	29.9	0.6251
AT2G34930			disease resistance family prot...		Lus10016337 [exp]	32.3	0.6163
AT3G58590			Pentatricopeptide repeat (PPR)...		Lus10020138 [exp]	40.1	0.6285
AT2G22530			Alkaline-phosphatase-like fami...		Lus10035939 [exp]	45.3	0.5985

Compare expression of checked genes

Lus10026943 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.