Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24520 1088 / 0 AHA5 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) AT1G80660 1045 / 0 AHA9 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) AT2G18960 1038 / 0 OST2, PMA, AHA1 PLASMA MEMBRANE PROTON ATPASE, OPEN STOMATA 2, H\(+\)-ATPase 1, H\(+\)-ATPase 1, H(+)-ATPase 1 (.1) AT3G42640 1034 / 0 AHA8 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) AT4G30190 1023 / 0 PMA2, AHA2 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) AT2G07560 1022 / 0 AHA6 H\(+\)-ATPase 6, H\(+\)-ATPase 6, H(+)-ATPase 6 (.1) AT5G57350 1013 / 0 AHA3, ATAHA3 H\(+\)-ATPase 3, ARABIDOPSIS THALIANA ARABIDOPSIS H\(+\)-ATPASE, H\(+\)-ATPase 3, H(+)-ATPase 3 (.1), H(+)-ATPase 3 (.2) AT5G62670 990 / 0 AHA11 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) AT3G47950 985 / 0 AHA4 H\(+\)-ATPase 4, H\(+\)-ATPase 4, H(+)-ATPase 4 (.1) AT3G60330 882 / 0 AHA7 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026946 [exp] 1272 / 0 AT2G24520 1634 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Lus10026224 [exp] 1101 / 0 AT2G24520 1509 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Lus10001631 [exp] 1091 / 0 AT4G30190 1679 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Lus10042445 [exp] 1085 / 0 AT1G80660 1490 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) Lus10024105 [exp] 1042 / 0 AT1G80660 1657 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) Lus10042183 [exp] 985 / 0 AT5G62670 1797 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Lus10003259 [exp] 985 / 0 AT5G62670 1797 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Lus10007948 [exp] 961 / 0 AT4G30190 998 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Lus10001437 [exp] 961 / 0 AT4G30190 1314 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G275000 [exp] 1137 / 0 AT2G24520 1589 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Potri.018G006000 [exp] 1132 / 0 AT2G24520 1554 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Potri.006G165900 [exp] 1094 / 0 AT4G30190 1576 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Potri.018G090300 [exp] 1086 / 0 AT2G18960 1560 / 0.0 PLASMA MEMBRANE PROTON ATPASE, OPEN STOMATA 2, H\(+\)-ATPase 1, H\(+\)-ATPase 1, H(+)-ATPase 1 (.1) Potri.006G188600 [exp] 1057 / 0 AT3G42640 1602 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.006G005900 [exp] 1050 / 0 AT3G42640 1543 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.018G112400 [exp] 1047 / 0 AT3G42640 1528 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.003G179800 [exp] 1024 / 0 AT1G80660 1463 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) Potri.015G066000 [exp] 991 / 0 AT5G62670 1640 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Potri.012G071600 [exp] 986 / 0 AT5G62670 1637 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Lus10026944 pacid=23142834 polypeptide=Lus10026944 locus=Lus10026944.g ID=Lus10026944.BGIv1.0 annot-version=v1.0 ATGACGGCCATTGAGGAAATGGCCGGTATGGATGTCCTTTGCAGTGACAAGACCGGGACTCTCACTTTGAACAAGCTCGGTGTTGATAGGAGTTTGGTTG AAGTGTTTGTTAAGGGTATGGACAAAGAACATGTTATTCTTCTTGCGGCCAGAGCTTCGAGGACCGAAAATCAGGATGCTATTGATGCTGCTATAGTTGG GATGCTTGCAGACCCTAAGGAGGCACGAGCAGACGTTAGGGAGATCCATTTTCTTCCATTCAATCCTGTGGAAAAGAGGACTGCTTTAACCTACATTGAT TCAGACGGAAACTGGCATCGGGCAAGTAAAGGTGCTCCTGAACAGATATTGAGCTTGTGTAACTGTAAGGAGGATGTTAGAAGGAAGGTTCATTCGGTTA TTGATAAGTTTGCGGAACGTGGACTTCGTTCTTTAGGAGTTGCACGACAGGAAGTGCCAGAAAAGAACAAAGACAGTCCTGGTGGTCCTTGGCAGCTTGT TGGTTTGTTACCTCTTTTTGACCCTCCCAGGCATGACAGTGCTGAAACCATTAGAAGAGCTCTCCACCTTGGAGTTAATGTGAAGATGATTACCGGTGAT CAGCTTGCAATTGCCAAGGAAACAGGACGGAGGCTTGGGATGGGAACAAACATGTATCCTTCATCTTCATTGCTTGGCCAGGATATGGATGCTTCTATTG CATCCCTCCCAGTAGATGAGTTGATCGAGAAGGCTGATGGATTTGCTGGGGTTTTCCCAGAACACAAGTACGAGATTGTGAAGAGGCTACAAGAGAAAAA ACACATCTGCGGAATGACTGGAGATGGCGTGAATGATGCTCCGGCTCTGAAGAAGGCTGATATCGGCATTGCAGTCGCTGATGCTACTGATGCTGCTAGA AGTGCGTCGGACATTGTCCTGACTGAACCCGGGCTCAGTGTGATCATCAGTGCTGTGCTTACCAGCAGAGCTATTTTCCAAAGGATGAAAAATTACACGA TATATGCCGTCTCTATCACCATCCGAATTGTTCTTGGCTTCATGTTGATTGCGTTGATATGGAAGTTTGACTTCTCCCCATTCATGGTTTTGATCATTGC CATACTCAACGACGGAACAATCATGACAATATCAAAGGATAGGGTGAAACCATCTCCACAGCCAGACAGCTGGAAGCTGAAAGAGATCTTTAGTACTGGG GTAGTGCTGGGAACATACATGGCAGTAATGACTGTAATCTTCTTCTGGGCAATGAAAGAGACCAACTTCTTCTCGGACAAGTTCAAAGTAAGGCCTTTGC ACGAGAGACCGGATCAAATGATGTCAGCTCTATACTTGCAAGTGAGTATAGTGAGTCAGGCCCTCATTTTCGTGACGAGGTCACGCAGCTGGTCCTTCAT CGAACTCCCCGGGAAGCTTCTTTGTACTGCTTTCATTGTTGCTCAGCTGATTGCAACACTGATAGCAGTGTATGCGAACTGGGGATTCGCAAGGATAACG GGTTGTGGATGGGGCTGGGCTGGAGTGATCTGGCTATACAGCGTGGTGACGTACGTCCCACTCGACATTCTCAAGTTTTCAATTCGATATGTTCTGAGTG GGAAGGCTTGGGATAATCTCTTGGAAAACAAGACTGCGTTTACTACAAAGAAAGATTACGGGAAAGGAGAGAGGGAAGCACAGTGGGCTACTGCACAGAG AACACTACATGGACTTCAGCCTCCGCCAGAGTTGACCACATTGTTTGCGGCCGATAAGAGCGGGTACAGGGAGCTGTCTGAGATAGCTGAACAAGCTAAG CGTCGTGCAGAGGTCGCTAGGCTGAGGGAACAAAAGACTTTGAAGGGACACGTTGAGTCAGTGGTGAAGCTTAAAGGGCTGGATATCGACGCAATTCAAC AACATTATACTGTTTAG
AA sequence Show only first row Show all	>Lus10026944 pacid=23142834 polypeptide=Lus10026944 locus=Lus10026944.g ID=Lus10026944.BGIv1.0 annot-version=v1.0 MTAIEEMAGMDVLCSDKTGTLTLNKLGVDRSLVEVFVKGMDKEHVILLAARASRTENQDAIDAAIVGMLADPKEARADVREIHFLPFNPVEKRTALTYID SDGNWHRASKGAPEQILSLCNCKEDVRRKVHSVIDKFAERGLRSLGVARQEVPEKNKDSPGGPWQLVGLLPLFDPPRHDSAETIRRALHLGVNVKMITGD QLAIAKETGRRLGMGTNMYPSSSLLGQDMDASIASLPVDELIEKADGFAGVFPEHKYEIVKRLQEKKHICGMTGDGVNDAPALKKADIGIAVADATDAAR SASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLIALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPQPDSWKLKEIFSTG VVLGTYMAVMTVIFFWAMKETNFFSDKFKVRPLHERPDQMMSALYLQVSIVSQALIFVTRSRSWSFIELPGKLLCTAFIVAQLIATLIAVYANWGFARIT GCGWGWAGVIWLYSVVTYVPLDILKFSIRYVLSGKAWDNLLENKTAFTTKKDYGKGEREAQWATAQRTLHGLQPPPELTTLFAADKSGYRELSEIAEQAK RRAEVARLREQKTLKGHVESVVKLKGLDIDAIQQHYTV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24520		AHA5	H\(+\)-ATPase 5, H\(+\)-ATPase...		Lus10026944 [exp]	0	1
AT2G24520		AHA5	H\(+\)-ATPase 5, H\(+\)-ATPase...		Lus10026946 [exp]	1.0	0.9548
AT5G38200			Class I glutamine amidotransfe...		Lus10009152 [exp]	2.4	0.8804
AT1G51340			MATE efflux family protein (.1...		Lus10016412 [exp]	3.5	0.8487
AT5G47070			Protein kinase superfamily pro...		Lus10040135 [exp]	4.6	0.7977
AT5G21280			hydroxyproline-rich glycoprote...		Lus10009801 [exp]	5.5	0.8278
AT3G06880			Transducin/WD40 repeat-like su...		Lus10023666 [exp]	11.8	0.7772
AT3G06880			Transducin/WD40 repeat-like su...		Lus10034937 [exp]	15.5	0.7725
AT4G16563			Eukaryotic aspartyl protease f...		Lus10007466 [exp]	15.7	0.8421
AT5G39130			RmlC-like cupins superfamily p...		Lus10003267 [exp]	18.0	0.8341
AT1G79860		ATROPGEF12, ROP...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10037866 [exp]	25.1	0.7928

Compare expression of checked genes

Lus10026944 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.