Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10710 403 / 9e-142 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026943 [exp] 583 / 0 AT5G10710 361 / 9e-126 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G005900 [exp] 527 / 0 AT5G10710 395 / 1e-138 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09496 [flax] [poplar] CENP-O Cenp-O kinetochore centromere component
Representative CDS sequence Show only first row Show all	>Lus10026945 pacid=23142897 polypeptide=Lus10026945 locus=Lus10026945.g ID=Lus10026945.BGIv1.0 annot-version=v1.0 ATGGATAGCGATGCTGAAGAGTCGCTTAAGAAAAGGCAAAAGAAGAACCCTTTTTCAGGGGACTCTTCTCGTCGGGGTTTCATGCAGGAGGAAGATACTC GCTTGGAGACCACAAGAGCCAGATTTACAAATCTGCTCAAGAGACATGGAGAATTGGCAGAACGTCTTTCCAGGGATTCTGACAAGATGATATTTGAACG TCTACAGAAAGAATTTGAAGCTGCAAGAGCATCTCAAACACAAGAAGTCTATCTTGATGGTGAAGAATGGAATGATGGGCTATTGGCAACTATCAGAGAA AGGGTTCACATGGAGGCTGACAGGAAGGCAATGGCAGCAGAACCTAATAATATGTCAGCTAATCATGCTGAAGAGAAAATCACATATAAAGTTGGTAACA AGGTGATTTGTTGCTTGGAAGGAGCCAGGATTGGCATACAATATGAAACAACTTTTGCAGGTGAACCCTGTGAGCTATATCATTGTGTGCTTGAAAGCCG GTCATTTCTTGAAAAAATGACTGTCCATGAGCATACTGTTCCATTTTTTCTGCCTATAAGAGATGCGGAAAATGATCTTCTTTCTTCCAATGCTATGGCA AGATTTTTCATCTCTAGATTTATAGATTTTGTCGGAGAACTCCTGCAGTCTTATGTGGAGAGAAGAGAGCAGGTCAGGATTCTTAAGGAGCTGTATGGAA ATCAAATTGGAGAACTGTATCACAGCCTGCCGTACCACTTGATAGAATTTGTTCTAGATGATTTTGATTGCAAAGTAACTGTAAGTCTCAGATACTCAGA ACTTGTTGCTGTGCTTCCAAGTCGGGTCAGAGTGTTTGCATGGCCAATAAACCAATTCAAGAAATCTGTAGCCATGGGAAGTCACCCTAATCCAACTCGA CTATCTTATGCGGAGGAAGCTATGCGAAATATGACCTTGCCAGAAGCTTATGCGGAGATGGTACTGAATCTGCCACAAGCCTTGCAGCAAGTGGTTCAGG ATAGCAGTCCTTTCTAG
AA sequence Show only first row Show all	>Lus10026945 pacid=23142897 polypeptide=Lus10026945 locus=Lus10026945.g ID=Lus10026945.BGIv1.0 annot-version=v1.0 MDSDAEESLKKRQKKNPFSGDSSRRGFMQEEDTRLETTRARFTNLLKRHGELAERLSRDSDKMIFERLQKEFEAARASQTQEVYLDGEEWNDGLLATIRE RVHMEADRKAMAAEPNNMSANHAEEKITYKVGNKVICCLEGARIGIQYETTFAGEPCELYHCVLESRSFLEKMTVHEHTVPFFLPIRDAENDLLSSNAMA RFFISRFIDFVGELLQSYVERREQVRILKELYGNQIGELYHSLPYHLIEFVLDDFDCKVTVSLRYSELVAVLPSRVRVFAWPINQFKKSVAMGSHPNPTR LSYAEEAMRNMTLPEAYAEMVLNLPQALQQVVQDSSPF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10710			unknown protein		Lus10026945 [exp]	0	1
AT5G41210		GSTU12, GST10, ...	glutathione S-transferase THET...		Lus10008308 [exp]	10.7	0.7384
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10009502 [exp]	12.8	0.8103
AT5G05190			Protein of unknown function (D...		Lus10030508 [exp]	15.7	0.7025
AT2G06005		FIP1	FRIGIDA interacting protein 1 ...		Lus10021558 [exp]	17.4	0.7601
AT5G62760			P-loop containing nucleoside t...		Lus10042176 [exp]	19.3	0.7780
AT1G15030			Protein of unknown function (D...		Lus10033747 [exp]	29.9	0.7933
AT5G36260			Eukaryotic aspartyl protease f...		Lus10027001 [exp]	34.1	0.7513
AT1G30825		DIS2, ARPC2, AR...	DISTORTED TRICHOMES 2, ACTIN-R...		Lus10008071 [exp]	38.4	0.7405
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Lus10017548 [exp]	43.6	0.7109
AT4G14570		AtAARE, AARE	acylamino acid-releasing enzym...		Lus10039405 [exp]	46.2	0.7638

Compare expression of checked genes

Lus10026945 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.