Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71230 598 / 0 CSN5B, AJH2 COP9-signalosome 5B (.1) AT1G22920 596 / 0 CSN5A, JAB1, AJH1 ARABIDOPSIS JAB1 HOMOLOG 1, COP9 signalosome 5A (.1.2) AT5G23540 129 / 1e-34 Mov34/MPN/PAD-1 family protein (.1.2) AT1G80210 53 / 2e-07 BRCC36A, AtBRCC36A BRCA1/BRCA2-containing complex 36 homolog A, Mov34/MPN/PAD-1 family protein (.1.2) AT3G06820 51 / 8e-07 BRCC36B, AtBRCC36B BRCA1/BRCA2-containing complex 36 homolog B, Mov34/MPN/PAD-1 family protein (.1.2) AT1G10600 42 / 0.0002 AMSH2 associated molecule with the SH3 domain of STAM 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020149 [exp] 484 / 2e-169 AT2G07560 469 / 1e-155 H\(+\)-ATPase 6, H\(+\)-ATPase 6, H(+)-ATPase 6 (.1) Lus10035470 [exp] 129 / 2e-34 AT5G23540 601 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Lus10031085 [exp] 129 / 3e-34 AT5G23540 599 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Lus10021746 [exp] 128 / 4e-34 AT5G23540 618 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Lus10042663 [exp] 128 / 4e-34 AT5G23540 616 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Lus10007893 [exp] 47 / 2e-05 AT1G80210 240 / 4e-76 BRCA1/BRCA2-containing complex 36 homolog A, Mov34/MPN/PAD-1 family protein (.1.2) Lus10030875 [exp] 41 / 0.001 AT1G10600 311 / 2e-108 associated molecule with the SH3 domain of STAM 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G006100 [exp] 657 / 0 AT1G22920 589 / 0.0 ARABIDOPSIS JAB1 HOMOLOG 1, COP9 signalosome 5A (.1.2) Potri.006G275100 [exp] 631 / 0 AT1G22920 565 / 0.0 ARABIDOPSIS JAB1 HOMOLOG 1, COP9 signalosome 5A (.1.2) Potri.014G032900 [exp] 129 / 1e-34 AT5G23540 563 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Potri.002G127900 [exp] 129 / 2e-34 AT5G23540 567 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Potri.001G172800 [exp] 44 / 9e-05 AT1G80210 484 / 2e-170 BRCA1/BRCA2-containing complex 36 homolog A, Mov34/MPN/PAD-1 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0366 [flax] [poplar] JAB PF01398 [flax] [poplar] JAB JAB1/Mov34/MPN/PAD-1 ubiquitin protease
Representative CDS sequence Show only first row Show all	>Lus10026947 pacid=23142802 polypeptide=Lus10026947 locus=Lus10026947.g ID=Lus10026947.BGIv1.0 annot-version=v1.0 ATGGATCCCTACCCTTCTTCTTCCTCCTCTCAAATCGCCCAGAAGACCTGGGAACTCGAGAACAACATTGTTTCCGTCGACATTCCCTCGACGAAAACAT CCGCCTCCGACCCCGCTTCCGACGCCATCTTCTACTACGACGAGCCCGCGCAGGTCAGGTTCCAGCAGGAGAAGCCCTGGACCAATGATCCTCACTACTT CCGCCGCGTCAAGATCTCTGCCCTCGCCCTCCTCAAGATGGTTGTCCACGCTCGATCCGGTGGGACTATTGAGGTCATGGGGCTTATGCAAGGCAAGACC GACGGCGATGCTATCATCGTTATGGACGCATTCGCTTTGCCTGTTGAAGGCACTGAAACTAGGGTTAATGCCCAGGCGGATGCCTACGAGTATATGGTCG ATTATTCCCAGACTAACAAGCAGGCTGGGAGACTGGAGAATGTTGTTGGGTGGTATCATTCACATCCCGGTTATGGGTGCTGGCTCTCTGGTATTGATGT GTCAACACAGATGCTGAACCAGCAGTTTCAGGAGCCTTTTCTAGCAGTTGTTATTGATCCAACAAGGACAGTCTCAGCAGGGAAAGTTGAGATTGGAGCC TTCCGAACATATCCTGAGGGATATAAGCCTCCGGATGATCCAGTCTCTGAATACCAGACCATTCCTCTGAACAAGATTGAGGACTTTGGTGTGCATTGTA AGCAGTATTATTCTCTGGATATCACTTACTTCAAGTCATCTCTTGATTCCCACCTCTTGGATCTTTTGTGGAACAAATACTGGGTGAATACACTTTCCTC ATCGCCACTCTTGGGCAATGGGGACTATGTTGCTGGACAAATTTCAGATTTAGCTGAAAAGCTGGAGCAAGCAGAGAATCAATTGAGCCACTCACGGTTC GGACCCTTGATAGCACCACCACAAAGGAAGAAAGAGGAAGAATCACAGCTTTCTAAAATTACCAGGGACAGTGCTAAGATTACTGTGGAACAGGTCCATG GTCTTATGTCACAGGTTATCAAGGACATCCTATTCAATTCTGTGCGGCAATCGAAGAAGTCTGGAGCAGAGACATCAGATCCGGAACCAATGGTGGAGAC CTGA
AA sequence Show only first row Show all	>Lus10026947 pacid=23142802 polypeptide=Lus10026947 locus=Lus10026947.g ID=Lus10026947.BGIv1.0 annot-version=v1.0 MDPYPSSSSSQIAQKTWELENNIVSVDIPSTKTSASDPASDAIFYYDEPAQVRFQQEKPWTNDPHYFRRVKISALALLKMVVHARSGGTIEVMGLMQGKT DGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGA FRTYPEGYKPPDDPVSEYQTIPLNKIEDFGVHCKQYYSLDITYFKSSLDSHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLSHSRF GPLIAPPQRKKEEESQLSKITRDSAKITVEQVHGLMSQVIKDILFNSVRQSKKSGAETSDPEPMVET

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71230		CSN5B, AJH2	COP9-signalosome 5B (.1)		Lus10026947 [exp]	0	1
AT3G06130			Heavy metal transport/detoxifi...		Lus10041228 [exp]	3.0	0.8483
AT1G32240	GARP	KAN2, KANADI2	KANADI 2, Homeodomain-like sup...		Lus10030989 [exp]	3.7	0.8269
AT5G66560			Phototropic-responsive NPH3 fa...		Lus10041276 [exp]	6.6	0.7727
AT1G32240	GARP	KAN2, KANADI2	KANADI 2, Homeodomain-like sup...		Lus10035387 [exp]	7.2	0.8166
AT1G68750		ATPPC4	phosphoenolpyruvate carboxylas...		Lus10017886 [exp]	11.5	0.8037
AT1G32930			Galactosyltransferase family p...		Lus10008282 [exp]	12.1	0.8115
AT5G25510			Protein phosphatase 2A regulat...		Lus10013141 [exp]	12.7	0.8193
AT3G25500		AHF1, AFH1, ATF...	ARABIDOPSIS THALIANA FORMIN HO...		Lus10002149 [exp]	13.8	0.8164
AT4G13360			ATP-dependent caseinolytic (Cl...		Lus10043253 [exp]	15.1	0.8150
AT3G15080			Polynucleotidyl transferase, r...		Lus10000997 [exp]	15.5	0.7959

Compare expression of checked genes

Lus10026947 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.