Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10310 267 / 9e-84 ATHKT1, HKT1 high-affinity K+ transporter 1, high-affinity K+ transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030616 [exp] 368 / 3e-122 AT4G10310 399 / 4e-134 high-affinity K+ transporter 1, high-affinity K+ transporter 1 (.1) Lus10040598 [exp] 342 / 1e-112 AT4G10310 374 / 3e-124 high-affinity K+ transporter 1, high-affinity K+ transporter 1 (.1) Lus10030872 [exp] 332 / 3e-108 AT4G10310 390 / 2e-130 high-affinity K+ transporter 1, high-affinity K+ transporter 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G132200 [exp] 243 / 2e-74 AT4G10310 413 / 9e-140 high-affinity K+ transporter 1, high-affinity K+ transporter 1 (.1) Potri.018G147501 [exp] 67 / 9e-13 AT4G10310 150 / 2e-43 high-affinity K+ transporter 1, high-affinity K+ transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0030 [flax] [poplar] Ion_channel PF02386 [flax] [poplar] TrkH Cation transport protein
Representative CDS sequence Show only first row Show all	>Lus10026948 pacid=23142922 polypeptide=Lus10026948 locus=Lus10026948.g ID=Lus10026948.BGIv1.0 annot-version=v1.0 ATGACGACGACTTGCTTTTACAGGTTAATCGCGGTCCGAGTTAACTCGTGCTTCACTCACCTCTGCTACTTCCTCTCCCTCTCCTTCTTCGGCTACTCCG TCCTCAAGTCCCTAAACCACAAACCTCCTGGCACCACTCTTGTCCCCAGGAACATCGACTTTTTTTTCACCGCAGTCTCCGCCTCCACCGATTCCAGCCT CTCCACCGTCGAAATGGAGGTCTTCTCCGACTCTCAGCTCCTCTTCATCGCTTTTCTCATGTTCGTCGGCGGAGAGGTCTTCATCTCTCTTATTTCCCTC ATTATAACAACCACACATCCGTCCAAGTGGGAGATGGAGCACGCTAAAAATATAAGCGACCCCACCTCTATTCCACGTATGTTGGAATTGGGCCGCGTGG TGGTCCCATTACCAGCTGACCACCACAACGACCGAGAATCGAACAAGTTTTTGTGCAGCATGGTATTGGGCTATATGATCGTGATGCATGTGCTTGGTGT TTTAGCTCTGTGGGTGTATCTCATATTCCAAAAAAGTGCGAGGGACATTCTGAGCGAGAAAGGACTCAGGAGTTTTACTTTCTCGCTTTTTACTTCGGTG TCCTCGTTCGCCAGCTGTGGATTCATCCCGACGAACGAGAACATGATCGTGTTTCGAAATATGTCCGGGATGCTACTCGTCCTCATCCCACAGGTGCTTA TGGGGAACGCGATGTTATTCCAGCACTGTATCTGGATGCTCGTTTGGGCGGCGGGGAAATTGTTCCCCAAGAAATATGGGGAATGTTCGCGATACCTTTT GACAAAGAATGATAATGATGACCATGAATATGATGATGATAAGACGACAGCTGGACGGGTTGTGCTTCCGGGTAGACATTCCCGGTATTTGGCAGGTACA GTGGCGGGGTTATTCGTGGTACAGTTGGTGATGATATGCGGACTGGATTGGGATTCAGAGGGTATGAAGGGGATGAATTCGTTTCAGAAGCTAGTGGGAT GGAGTTTTATGGCGGTGAATTCCAGGCACGCCGGCGAGAGCGTCGTCGACTTGTCCACTCTTTCTCCGGCGGTTCTGGTGGTCTTTCTCGTCATGATGTA TCTTCCTCCCTGTACATCGTTCATCCCCGTGTCTGGAAAACAAAAAGAAGAGTACTCGAACAGTAATCCGCATTCAAAAAGGACTGGACGGCCAGGGAAC GATATGATCACTGAGAATAAAAGAAACAATGCAATCCTGGAGAATGTGGTACCCTCGCAACTATCTATTATCATTGTCTTCGTCGCCATGGTGTGCATCA TTGAGAGGGAAAATATGCAGAATGACCCCCTCAATTTCAACGTTTTCAACATTGCCCTTGAAGTTGTCAGTTCGGAGATGGTGACAGTGATGGTTCAGAT ATCATGA
AA sequence Show only first row Show all	>Lus10026948 pacid=23142922 polypeptide=Lus10026948 locus=Lus10026948.g ID=Lus10026948.BGIv1.0 annot-version=v1.0 MTTTCFYRLIAVRVNSCFTHLCYFLSLSFFGYSVLKSLNHKPPGTTLVPRNIDFFFTAVSASTDSSLSTVEMEVFSDSQLLFIAFLMFVGGEVFISLISL IITTTHPSKWEMEHAKNISDPTSIPRMLELGRVVVPLPADHHNDRESNKFLCSMVLGYMIVMHVLGVLALWVYLIFQKSARDILSEKGLRSFTFSLFTSV SSFASCGFIPTNENMIVFRNMSGMLLVLIPQVLMGNAMLFQHCIWMLVWAAGKLFPKKYGECSRYLLTKNDNDDHEYDDDKTTAGRVVLPGRHSRYLAGT VAGLFVVQLVMICGLDWDSEGMKGMNSFQKLVGWSFMAVNSRHAGESVVDLSTLSPAVLVVFLVMMYLPPCTSFIPVSGKQKEEYSNSNPHSKRTGRPGN DMITENKRNNAILENVVPSQLSIIIVFVAMVCIIERENMQNDPLNFNVFNIALEVVSSEMVTVMVQIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10310		ATHKT1, HKT1	high-affinity K+ transporter 1...		Lus10026948 [exp]	0	1
AT3G61940		ATMTPA1, MTPA1	Cation efflux family protein (...		Lus10012604 [exp]	1.0	0.8628
AT4G36250		ALDH3F1	aldehyde dehydrogenase 3F1 (.1...		Lus10031849 [exp]	1.4	0.8622
AT1G10550		XTH33, XET	xyloglucan:xyloglucosyl transf...		Lus10013000 [exp]	1.7	0.8443
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10024162 [exp]	5.3	0.8420
AT1G75390	bZIP	ATBZIP44	basic leucine-zipper 44 (.1.2)		Lus10001347 [exp]	6.3	0.8354
AT5G40870		UKL1, ATUK/UPRT...	URIDINE KINASE-LIKE 1, uridine...		Lus10032051 [exp]	7.7	0.7727
AT3G22540			Protein of unknown function (D...		Lus10010564 [exp]	8.5	0.8301
AT4G31950		CYP82C3	"cytochrome P450, family 82, s...		Lus10042921 [exp]	8.5	0.7914
AT2G01940	C2H2ZnF	SGR5, ATIDD15	SHOOT GRAVITROPISM 5, ARABIDOP...		Lus10031883 [exp]	8.8	0.7919
AT3G55120		A11, CFI, TT5	TRANSPARENT TESTA 5, CHALCONE ...		Lus10030310 [exp]	9.2	0.7823

Compare expression of checked genes

Lus10026948 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.