Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31420 493 / 1e-174 C2H2ZnF Zinc finger protein 622 (.1.2) AT2G24500 451 / 5e-158 C2H2ZnF FZF Zinc finger protein 622 (.1) AT1G01930 44 / 0.0002 C2H2ZnF zinc finger protein-related (.1) AT1G43860 43 / 0.0003 sequence-specific DNA binding transcription factors (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020150 [exp] 761 / 0 AT4G31420 506 / 8e-180 Zinc finger protein 622 (.1.2) Lus10009236 [exp] 46 / 4e-05 AT1G01930 576 / 0.0 zinc finger protein-related (.1) Lus10038006 [exp] 45 / 7e-05 AT1G01930 575 / 0.0 zinc finger protein-related (.1) Lus10029749 [exp] 45 / 0.0001 AT1G43860 539 / 0.0 sequence-specific DNA binding transcription factors (.1) Lus10042780 [exp] 44 / 0.0001 AT1G43860 545 / 0.0 sequence-specific DNA binding transcription factors (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G275300 [exp] 521 / 0 AT4G31420 459 / 2e-161 Zinc finger protein 622 (.1.2) Potri.018G006300 [exp] 512 / 0 AT4G31420 463 / 1e-162 Zinc finger protein 622 (.1.2) Potri.002G149800 [exp] 47 / 2e-05 AT1G01930 527 / 0.0 zinc finger protein-related (.1) Potri.005G186700 [exp] 46 / 2e-05 AT1G43860 513 / 0.0 sequence-specific DNA binding transcription factors (.1) Potri.002G073200 [exp] 45 / 4e-05 AT1G43860 560 / 0.0 sequence-specific DNA binding transcription factors (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [flax] [poplar] C2H2-zf PF12171 [flax] [poplar] zf-C2H2_jaz Zinc-finger double-stranded RNA-binding
Representative CDS sequence Show only first row Show all	>Lus10026949 pacid=23142951 polypeptide=Lus10026949 locus=Lus10026949.g ID=Lus10026949.BGIv1.0 annot-version=v1.0 ATGACTGCGAAAATGACAGGCCTAACCTGCAACTCTTGCAACCAGGAATTCCAAGATGATGCTGAGCAAAAGCACCACTACAAGTCTGATTGGCACCGCT ACAATCTCAAACGCAAGGTAGCTGGTGTTCCGGGAGTTACGGAAGCACTGTTTGAGGCCAGACAGTCTGCTATTGCTTTAGAAAAAGACAAGTCTAATGA GACTCCAATGCTCTACACGTGTGTACTCTGCGGCAAGGGTTATCGAAGTTCAAAAGCCCATGCTCAACACGTCAAATCGAGAAGCCACATCATGAAAGCG TCTCAGGGGACAAAGCTGGAAGAAGAGGAAACTAGAATCAAGCCTCTTCCTCAACGTGTCCTGAAAAAAGCTCAGGAAGAACTAGCTGATATAAGTGAAG AAAGTGACGATGATGAGTGGGTAGAAGCTGATCCAGATGAAGTTCTTATTGCTGATGACACCAATGTGGATGAAGCAGGAGCAAGCAAGGATACTATGGA TGAGGATGAAGATGACATTGAGGACATGTTTGACCCTGCTTGTTGCTTCATGTGTGATCATGAGAATGACAGTATAGAAGCTTGCATGGTACACATGCAT AAGTACCACGGATTCTTCGTTCCTGATGTAGAGTATCTCAAGGACCCAAAGGGCCTTCTTACTTATCTTGGTCTCAAGGTAATGAGGGATTTCATGTGTT TATACTGCAATGATCGACGTCAACCATTCAATAGTATAGAAGCAGTTAGGAAGCATATGGAAGCAAAAAGTCACTGCAAAGTCCATTATGGTGATGGGGA TGATGAAGAGGAAGTAGAATTGGAAGACTTCTATGATTATAGTAGCAGTTATGTTGATGAGGATGGAAAACAGCTGGTTGCTTCGGGTGAAGAAGGCACC ACCCTGGATCTTGGGGGCAGTGGTTCTGAGCTCATTATCACCACCAGGGGTGATGGTAAAATAGCATCTAAAACACTTGGTTCGCGAGAATTCCTGCGCT ACTATCGGCAGAAGCCACGACCACCGGCTAATGATATTGGCATTAGTGCCTCCTTGGCCGCTAGGTACAGGAGCATGGGATTGGCTACAGTTCAGTCGAA AGAGCAGATAGTGAGGATGAAAGTGTTGAAGGCAATGAAGCGATCAGGTGTGGAGGCCTTGCGCACAAAGATAGGGTTGAAGAACAATGTGATAAGGAAT CTGCCGAAGAATGTCCCGTATTAG
AA sequence Show only first row Show all	>Lus10026949 pacid=23142951 polypeptide=Lus10026949 locus=Lus10026949.g ID=Lus10026949.BGIv1.0 annot-version=v1.0 MTAKMTGLTCNSCNQEFQDDAEQKHHYKSDWHRYNLKRKVAGVPGVTEALFEARQSAIALEKDKSNETPMLYTCVLCGKGYRSSKAHAQHVKSRSHIMKA SQGTKLEEEETRIKPLPQRVLKKAQEELADISEESDDDEWVEADPDEVLIADDTNVDEAGASKDTMDEDEDDIEDMFDPACCFMCDHENDSIEACMVHMH KYHGFFVPDVEYLKDPKGLLTYLGLKVMRDFMCLYCNDRRQPFNSIEAVRKHMEAKSHCKVHYGDGDDEEEVELEDFYDYSSSYVDEDGKQLVASGEEGT TLDLGGSGSELIITTRGDGKIASKTLGSREFLRYYRQKPRPPANDIGISASLAARYRSMGLATVQSKEQIVRMKVLKAMKRSGVEALRTKIGLKNNVIRN LPKNVPY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31420	C2H2ZnF		Zinc finger protein 622 (.1.2)		Lus10026949 [exp]	0	1
AT2G04520			Nucleic acid-binding, OB-fold-...		Lus10029827 [exp]	1.0	0.9658
AT1G05000		AtPFA-DSP1	plant and fungi atypical dual-...		Lus10035333 [exp]	2.4	0.9613
AT1G03070			Bax inhibitor-1 family protein...		Lus10022085 [exp]	4.1	0.9420
AT4G02280		ATSUS3, SUS3	sucrose synthase 3 (.1)		Lus10013417 [exp]	4.6	0.9535
AT3G24170		ATGR1	glutathione-disulfide reductas...		Lus10000758 [exp]	6.3	0.9604
AT1G10370		GST30B, ATGSTU1...	GLUTATHIONE S-TRANSFERASE U17,...		Lus10030805 [exp]	7.1	0.9634
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10005399 [exp]	15.1	0.9568
AT4G17486			PPPDE putative thiol peptidase...		Lus10007844 [exp]	16.5	0.9156
AT4G19880			Glutathione S-transferase fami...		Lus10036209 [exp]	21.5	0.9532
AT1G10370		GST30B, ATGSTU1...	GLUTATHIONE S-TRANSFERASE U17,...		Lus10013282 [exp]	25.6	0.8965

Compare expression of checked genes

Lus10026949 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.