Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31410 333 / 1e-114 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) AT3G24740 173 / 2e-51 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) AT4G08460 162 / 5e-48 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) AT1G68140 161 / 2e-47 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) AT1G77770 160 / 2e-47 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) AT1G15430 123 / 2e-33 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) AT1G80220 117 / 3e-31 Protein of unknown function (DUF1644) (.1) AT3G25910 93 / 2e-21 Protein of unknown function (DUF1644) (.1) AT2G26050 84 / 4e-19 Protein of unknown function (DUF1644) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020151 [exp] 484 / 2e-174 AT4G31410 363 / 1e-126 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) Lus10022809 [exp] 189 / 6e-58 AT3G24740 351 / 1e-120 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) Lus10011876 [exp] 186 / 9e-56 AT3G24740 358 / 5e-122 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) Lus10025356 [exp] 164 / 3e-49 AT1G68140 282 / 3e-95 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Lus10020957 [exp] 164 / 1e-48 AT1G68140 309 / 1e-104 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Lus10004940 [exp] 165 / 3e-48 AT1G68140 319 / 4e-108 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Lus10009772 [exp] 155 / 2e-45 AT4G08460 256 / 3e-85 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Lus10024758 [exp] 155 / 4e-45 AT4G08460 251 / 8e-83 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Lus10019436 [exp] 154 / 2e-44 AT3G25910 277 / 3e-91 Protein of unknown function (DUF1644) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G275400 [exp] 389 / 1e-136 AT4G31410 311 / 4e-106 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) Potri.018G006400 [exp] 389 / 3e-136 AT4G31410 331 / 2e-113 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) Potri.002G216600 [exp] 172 / 4e-51 AT3G24740 334 / 2e-113 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) Potri.003G021800 [exp] 171 / 1e-50 AT1G68140 315 / 2e-106 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Potri.002G088700 [exp] 166 / 5e-49 AT4G08460 245 / 2e-80 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Potri.001G208800 [exp] 165 / 7e-49 AT1G68140 312 / 6e-106 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Potri.003G060800 [exp] 168 / 2e-48 AT3G25910 188 / 3e-55 Protein of unknown function (DUF1644) (.1) Potri.018G070500 [exp] 157 / 1e-45 AT3G25910 246 / 2e-79 Protein of unknown function (DUF1644) (.1) Potri.006G154300 [exp] 155 / 5e-45 AT3G25910 152 / 8e-43 Protein of unknown function (DUF1644) (.1) Potri.005G172300 [exp] 139 / 5e-39 AT4G08460 219 / 2e-70 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF07800 [flax] [poplar] DUF1644 Protein of unknown function (DUF1644)
Representative CDS sequence Show only first row Show all	>Lus10026950 pacid=23142876 polypeptide=Lus10026950 locus=Lus10026950.g ID=Lus10026950.BGIv1.0 annot-version=v1.0 ATGGCAATTGAACACTATCTTCGAAGAGCCTTTGCTGCTAAAAGTCGAAACATGGAGGACATTCAGTTGGATACTGAGTGGGAAGATGTAGCCTGCCCAA TATGCTTGGATTTCCCACATAATTGTGTGCTACTTCAGTGTTCTTCGTATGATAAGGGGTGCAGGCCATTTGTTTGTGATACTGATCACTTGCATTCAAA TTGTTTGGACCGCTTCAAGAAGGCCTGCGGTATGCCACCTCCTTCGTTGTCTGAAGGAACTCCGGGAACAAATTCTGAGTCATCAGAAGCAGATGAAAAA GTCAAACTTGCTTGTCCCTTGTGTAGAGGAGAAGTTACTGGCTGGATTGTCGTTCGGGAAGCTCGGTTACGTTTGGTTGGGAAGAAGAGGGGTTGTGAAG AACAGAAATGTAAATTTACAGGTGCGTATTTGGAACTGCAGGAGCATGCCAAAAGAGAGCATCCACATGCTCGTCCTGCCAAAATTGACCCTGCTCGTCA GTTGGACTGGGAAAATTTCCAACAATCATCTGAGATCATAGATGTTTTGAGCACGATACATTCGGAAGTACCACGTGGTGTGGTTTTGGGGGATTATGTG ATCGAGTATGGGGATGATGATACTACAGATGAATATGATGACTTTCCTAGAAACGAAGGAAACTGGTGGACTTCCTGCATCTTCTATAAGGTATTTGGAA ACTTTAAAAACTCAAGAAACAGAAGAAGAGCAAGAATAGCTGATGCCAGAAGAGGAAGTCGTCGCTCAAGTTATGAGACTTCAAACTCAGATGAGGGATC GGTTACTTCTGTAGACTTTGCAGAGTATAGATTAGATGAGACAGACGATGAATATCCAAGTGCTACCAGGGGCTTCTCTGCTCATCACAGGCAAGATAAA AACCCATCGTTCTTTTTCTTAAAATGTTTATAA
AA sequence Show only first row Show all	>Lus10026950 pacid=23142876 polypeptide=Lus10026950 locus=Lus10026950.g ID=Lus10026950.BGIv1.0 annot-version=v1.0 MAIEHYLRRAFAAKSRNMEDIQLDTEWEDVACPICLDFPHNCVLLQCSSYDKGCRPFVCDTDHLHSNCLDRFKKACGMPPPSLSEGTPGTNSESSEADEK VKLACPLCRGEVTGWIVVREARLRLVGKKRGCEEQKCKFTGAYLELQEHAKREHPHARPAKIDPARQLDWENFQQSSEIIDVLSTIHSEVPRGVVLGDYV IEYGDDDTTDEYDDFPRNEGNWWTSCIFYKVFGNFKNSRNRRRARIADARRGSRRSSYETSNSDEGSVTSVDFAEYRLDETDDEYPSATRGFSAHHRQDK NPSFFFLKCL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31410			Protein of unknown function (D...		Lus10026950 [exp]	0	1
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Lus10038337 [exp]	2.2	0.9038
AT1G34750			Protein phosphatase 2C family ...		Lus10033453 [exp]	4.0	0.9055
AT4G06676			unknown protein		Lus10019950 [exp]	4.2	0.9117
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Lus10018289 [exp]	4.9	0.9081
AT5G66900			Disease resistance protein (CC...		Lus10034761 [exp]	5.8	0.8849
AT1G04555			unknown protein		Lus10014458 [exp]	6.7	0.9138
AT5G01800			saposin B domain-containing pr...		Lus10022750 [exp]	10.2	0.8856
AT3G21700		ATSGP2	Ras-related small GTP-binding ...		Lus10039670 [exp]	10.4	0.8726
AT5G47860			Protein of unknown function (D...		Lus10008591 [exp]	11.5	0.8908
AT5G62570			Calmodulin binding protein-lik...		Lus10034121 [exp]	12.2	0.8909

Compare expression of checked genes

Lus10026950 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.