Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31390 846 / 0 Protein kinase superfamily protein (.1.2) AT5G10630 781 / 0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2) AT1G07920 302 / 5e-91 GTP binding Elongation factor Tu family protein (.1) AT1G07930 302 / 5e-91 GTP binding Elongation factor Tu family protein (.1.2) AT1G07940 302 / 5e-91 GTP binding Elongation factor Tu family protein (.1.2) AT5G60390 302 / 5e-91 GTP binding Elongation factor Tu family protein (.1.2.3) AT1G79600 291 / 4e-84 Protein kinase superfamily protein (.1) AT1G18070 278 / 3e-81 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3) AT1G71810 257 / 2e-72 Protein kinase superfamily protein (.1) AT3G24190 258 / 3e-72 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020153 [exp] 1195 / 0 AT5G10630 774 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2) Lus10020152 [exp] 1169 / 0 AT4G31390 1041 / 0.0 Protein kinase superfamily protein (.1.2) Lus10026953 [exp] 441 / 2e-141 AT5G10630 327 / 1e-104 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2) Lus10019918 [exp] 306 / 2e-92 AT1G07920 891 / 0.0 GTP binding Elongation factor Tu family protein (.1) Lus10040378 [exp] 305 / 6e-92 AT1G07940 885 / 0.0 GTP binding Elongation factor Tu family protein (.1.2) Lus10023497 [exp] 305 / 6e-92 AT1G07940 885 / 0.0 GTP binding Elongation factor Tu family protein (.1.2) Lus10023174 [exp] 285 / 6e-85 AT1G07940 866 / 0.0 GTP binding Elongation factor Tu family protein (.1.2) Lus10035701 [exp] 290 / 2e-83 AT1G79600 1034 / 0.0 Protein kinase superfamily protein (.1) Lus10041996 [exp] 280 / 2e-82 AT1G18070 801 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G275500 [exp] 893 / 0 AT5G10630 757 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2) Potri.006G275600 [exp] 876 / 0 AT4G31390 1058 / 0.0 Protein kinase superfamily protein (.1.2) Potri.018G006500 [exp] 761 / 0 AT5G10630 757 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2) Potri.010G218700 [exp] 306 / 1e-92 AT5G60390 891 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.010G218800 [exp] 306 / 1e-92 AT5G60390 891 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.010G219500 [exp] 306 / 1e-92 AT5G60390 891 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.010G218600 [exp] 306 / 1e-92 AT5G60390 888 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.006G130900 [exp] 306 / 2e-92 AT5G60390 864 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.008G042500 [exp] 305 / 6e-92 AT5G60390 856 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.008G043100 [exp] 305 / 6e-92 AT5G60390 857 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0575 [flax] [poplar] EFTPs PF03144 [flax] [poplar] GTP_EFTU_D2 Elongation factor Tu domain 2 CL0575 [flax] [poplar] PF03143 [flax] [poplar] GTP_EFTU_D3 Elongation factor Tu C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00009 [flax] [poplar] GTP_EFTU Elongation factor Tu GTP binding domain CL0016 [flax] [poplar] PKinase PF03109 [flax] [poplar] ABC1 ABC1 family
Representative CDS sequence Show only first row Show all	>Lus10026952 pacid=23142933 polypeptide=Lus10026952 locus=Lus10026952.g ID=Lus10026952.BGIv1.0 annot-version=v1.0 ATGGAGCTTCTTCATCCCAATTTGATAAACGCTTCTCCTTCCCTCACCAGGCACCGTAGAGATGTTCTCTTCCGACCTTCATTTTTCCCCGCCGTCGTTC CAAAGAGGAGTATGCTTCCGTCGGCCGGTCGAGTTTCTGCTGCTACTGCAACGGGAGCCGCTGCTCAGCAATTAGCCAAGTCCAGTAGTGCCATGGAACA GCTTGACTTCGAACGTGGCGTCTGCGTCCCATTCCGCAAGTACTCTCCTGAGACAGTGAGGAATAAGGTGTTGGAATCGAGAGGTAGCACCTTGTCTCTA ATGTTAAGGGGAGTGGAGATCGTTTGGAACTTGGGATTCTATTGGGCTAACTTGATGTATGATTGCTTCGTCGGAAGGGATGAAGAGGTGGTTCCTTTTC GTGCTCGTCAGCTTAGGAATCTCTTGTGCGATTTAGGGCCTTCCTTCATTAAAGCTGGTCAGGTTCTTGCCAACAGGCCTGACATAATCAGAGAAGATTA TATGAATGAATTGTGTATTCTTCAGGACGATGTTCCTTCATTTCCCAATCAGGCAAGAAATAATTGCTCTCTCATTGCTTTCAACATCATAGAAGAAGAA CTAGGTCAACCCCTTGAAGCCGTATTCAGTAAGATTTCATCACGGACAATCGCAGCTGCAAGCTTGGGCCAAGTTTACCGGGCTACCTTAAGGGAAACAG GTGCTGAAGTTGCAATCAAGGAAGCCCGAAATATTGAAGACTTCTTGGAGAATTTTGAAGGGGACCCCACTGTTAAGATTCCGATAGTTTACAAAAACCT TTCAGGATCCCGTGTTATAGTTATGGAATGGATTGATGGTATTCGGTGTACTGACCCACAGGCCATAAAAAATGCTGGGATCGATGTTAATGGATTCTTA ACAGTTGGGGTTAGTGCTGCTTTGAGGCAGTTGCTTGAATTTGGTTTGTTTCACGGGGACCCACATCCTGGAAATGTTTTTGCTATGCAAGATGGACGTA TTGCATATGTGGATTTTGGGAACGTTGCTGTGCTTAGTCAGCAAAACAAGCAGATATTGATTGATGCTGTTGTTCATGCCGTCAACGAGGACTATGCAGA GATGGCAAATGACTTCACCAGGCTTGGTTTCTTGGCTAGTGGGACAGATGTAGCACCTCTGGTTCCAGCCCTGGAGGCAATTTGGCAGAACTCTGTTGGG AAAGGACTTTCAGATTTTAATTTCAGAAGCGTTACAGGGAAATTTAATCAGTTGGTTTACAACTACCCGATTCGCATACCGGATAGATTTTCTCTTGTTA TCAGATCTTTGTTGACCCAAGAGGGTATTTGTTTCACCCTGCAGCCAGATTTTAAATTTCTTGAGGTTGCCTACCCATATGTGGCAAAGCGCCTTCTGAC CGATCCAAATCCAGCTCTTCGCGAGCGCCTAATACAGGCAAGTTCTTTTGCTGATTGTTTCTGCACTGGTACAGCCTTGTGGACCGTCTCTGCCATTAGC AATCTCCGAGGTCACAGGAAATTCACCATCATTAGCTTTTTGTTACAGGTTCTTTTCAAAGGTGGCGTTTTTCAGTGGAAGCGACTAGAAAATCTCATTT CCCTTGCAAAAGAGAACGTAGCCAAAATGAGCAGCAACCCTGCCATACAAACAAAGAATACGACAAGGTCTAGAGACTGGCAAATGCAAAGTAAGCTAGA CTTGACTGATACCATCAAAGACGGGGCTCGTCTATTTTTCGTTGACGAGGGAATTCGCAGACAGCTCCTGATGGCTCTCACTGAAGACTCAAAACTTCAC ATACAAGAGCTTGTGGATGTATATAGACTTGTCGAAGGTGAAATCGATGTACCTACAGTTGCGGTGGAAGTTGTAAGAGCAAAAGTAGAAGAGCCTGAAG AAAAAACTAATAAGCCATTGTTGTGGAGTTGCTCTATCTGTACTTATGACAATGAGGAGGGCATGTCCGTATGTGATATTTGTGGTGTTATTCGCAAACC GGTGGCTGGGGATTTCAAAAGCAGCAATAAGAAAGCAGCTGACTCTGACGGCAACTGCTCTGGAGTTTCGTTATTGGCAAAGTCTCTTTTTGCATCATCG CCACCTCAGACATCCCAGAAGGCCATGGTTGGCCAATTGCATAAGGATGACATTTTGATGGAAACCAGGACTGAATTGCACAAATCTCCTTTCAAGTTTG ATGTTCCTTCCCCAGATGACGTTGTTTCTAGCAGGCTACATTCTTCAAAAACAATTACGAAAGGTAACATAAAGCCTTCAACAATAGCTAAAGAGAACGG TGCAGAAAATCCTCATTCTACCATTCAAAGGTCTGAAAACTCATCCAAGGCAAGAGGGAAACAAGGTAAACTGGATGATAAAAAATTGACAGACTATGCC GTCGATGGAGAATCAGATTCCAAAAGCTCATATCGTTCGCTTGCAGAGATATCTCATGGAAGAGATGGTGGTATATCAGGAAAAAAGTCTTCGAAGAATG AGATCCTGAGTAATCAACCCAGTGATGAAGCTTCTAGTAGCTCTTCTCAAACAAAGCTTAAAGAGAAACATGGGAAGGGGGATGATGATTTCGATGATGG AAAGCCTCCAACAAATAATTTGAGAAGGATGGCTTTGTCTGAAAAACCAGGAAATCTTATTGCTCCCAATTCCAGGAAAGCTAAGTCAAGTGCAGAATAC AAACCTGATAAATGGATGCTTCCTGACAAGGCTACAGACGCGTTAACTCAACTGAACCTTGCAATTGTTGGTCATGTAGATTCAGGAAAATCAACGCTGT CGGGAAGACTGCTGCATCTTTTGGGGAGAATTACTTCCAAAGAAATGCACAAATATGAAAAGGAGGCCAAGATACAGGGCAAGGGTTCTTTTGCATATGC ATGGGCTTTAGATGAGAGTCCTGAAGAGCGCGAAAGAGGGATAACTATGAATGTGGCAGTTGCCTATTTTGATTCCAAAAAGTATCACGTTGTGGTCCTT GATTCTCCCGGTCACAAAGATTTTGTTCCAAACATGATATCTGGCGCTACACAAGCGGATGCTGCTGTTCTAGTGATTGATGCATCTAATGGTGCCTTTG AAGCTGGGATAGACAGTTCCAAAGGACAAACCAAGGAGCATGCCCGATTGATTAGAAGTTTCGGCGTGGAACAAATTATAGTTGGTATCAATAAGATGGA TGCTGTAGGTTACTCAAAGGATCGGTTTGATTTCATAACTGCACAACTTGGTGCATTTCTCCGTTCTTGTGGGTTCAAGGATTCATGTATTACGTTGATT CCCTTGAGTGCTATAGAAAACCAAAACTTAGTGGCTGCTCCTTCTGATGCCCGCTTATCATCCTGGTACAGAGGACCTTATTTATTAGATGCAATTGATT CGCTTCAACCTCCAGCAAGAGATTTTGGGAAACCGCTGCTGATGCCAATATGTGATGTAATAAAATCATCTTCACAAGGTCAGGTGTCAGCCTGTGGTAA ATTGGAGGCTGGAGCACTTCGAAGTGGAATGAAGGTGCTGGTGATGCCGTCGGGAGAAGTAGGAACAATAATGTCACTAGAGCGTGATTCACAGGGCTGT GCTGCCGCCAGAGCAGGAGACAACGTGGCCGTCAATCTTCAAGGAGTCGAGGGGAGTAATGTGATGCCAGGAGGTGTCATATGTCACCCTGACTATCCAG TTGGGGTTGCAAATCATTTGGAGTTGAAAGTGCTGGCATTAGAATTATCAATCCCAATCCTCAACGGCTCTCAGGTTGAATTCCACATACATCATGCACA GGAGGCTGGACGAGTGGCGAAAATTGTATCGCTACTTGATCCCAAGACAGGGAAGCAAACAAAGAGATATCCCCGTTGCCTTGTGTCGAAGCAAAGCGCA GTGCTCGAGGTGGTTTTGAATGAGCCGGTATGTGTAGAAGAATTCTCCAACAGTAGAGCTCTGGGAAGGGTGTTTCTGCGAGCAATGGGCAGAACTATCG CAGTGGGCGTCGTCACCAGGATTATCCAATGA
AA sequence Show only first row Show all	>Lus10026952 pacid=23142933 polypeptide=Lus10026952 locus=Lus10026952.g ID=Lus10026952.BGIv1.0 annot-version=v1.0 MELLHPNLINASPSLTRHRRDVLFRPSFFPAVVPKRSMLPSAGRVSAATATGAAAQQLAKSSSAMEQLDFERGVCVPFRKYSPETVRNKVLESRGSTLSL MLRGVEIVWNLGFYWANLMYDCFVGRDEEVVPFRARQLRNLLCDLGPSFIKAGQVLANRPDIIREDYMNELCILQDDVPSFPNQARNNCSLIAFNIIEEE LGQPLEAVFSKISSRTIAAASLGQVYRATLRETGAEVAIKEARNIEDFLENFEGDPTVKIPIVYKNLSGSRVIVMEWIDGIRCTDPQAIKNAGIDVNGFL TVGVSAALRQLLEFGLFHGDPHPGNVFAMQDGRIAYVDFGNVAVLSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLASGTDVAPLVPALEAIWQNSVG KGLSDFNFRSVTGKFNQLVYNYPIRIPDRFSLVIRSLLTQEGICFTLQPDFKFLEVAYPYVAKRLLTDPNPALRERLIQASSFADCFCTGTALWTVSAIS NLRGHRKFTIISFLLQVLFKGGVFQWKRLENLISLAKENVAKMSSNPAIQTKNTTRSRDWQMQSKLDLTDTIKDGARLFFVDEGIRRQLLMALTEDSKLH IQELVDVYRLVEGEIDVPTVAVEVVRAKVEEPEEKTNKPLLWSCSICTYDNEEGMSVCDICGVIRKPVAGDFKSSNKKAADSDGNCSGVSLLAKSLFASS PPQTSQKAMVGQLHKDDILMETRTELHKSPFKFDVPSPDDVVSSRLHSSKTITKGNIKPSTIAKENGAENPHSTIQRSENSSKARGKQGKLDDKKLTDYA VDGESDSKSSYRSLAEISHGRDGGISGKKSSKNEILSNQPSDEASSSSSQTKLKEKHGKGDDDFDDGKPPTNNLRRMALSEKPGNLIAPNSRKAKSSAEY KPDKWMLPDKATDALTQLNLAIVGHVDSGKSTLSGRLLHLLGRITSKEMHKYEKEAKIQGKGSFAYAWALDESPEERERGITMNVAVAYFDSKKYHVVVL DSPGHKDFVPNMISGATQADAAVLVIDASNGAFEAGIDSSKGQTKEHARLIRSFGVEQIIVGINKMDAVGYSKDRFDFITAQLGAFLRSCGFKDSCITLI PLSAIENQNLVAAPSDARLSSWYRGPYLLDAIDSLQPPARDFGKPLLMPICDVIKSSSQGQVSACGKLEAGALRSGMKVLVMPSGEVGTIMSLERDSQGC AAARAGDNVAVNLQGVEGSNVMPGGVICHPDYPVGVANHLELKVLALELSIPILNGSQVEFHIHHAQEAGRVAKIVSLLDPKTGKQTKRYPRCLVSKQSA VLEVVLNEPVCVEEFSNSRALGRVFLRAMGRTIAVGVVTRIIQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31390			Protein kinase superfamily pro...		Lus10026952 [exp]	0	1
AT4G31390			Protein kinase superfamily pro...		Lus10020152 [exp]	1.4	0.8698
AT5G42400		SDG25, ATXR7	ARABIDOPSIS TRITHORAX-RELATED7...		Lus10025172 [exp]	4.5	0.7787
AT3G01100		ATHYP1, HYP1	ARABIDOPSIS THALIANA HYPOTHETI...		Lus10005223 [exp]	8.4	0.7665
AT1G21640		ATNADK2, NADK2,...	NAD kinase 2 (.1.2)		Lus10028677 [exp]	18.2	0.7057
					Lus10040651 [exp]	21.0	0.7022
AT3G61740		SDG14, ATX3	SET domain protein 14 (.1.2)		Lus10012626 [exp]	22.7	0.7774
AT1G15240			Phox-associated domain;Phox-li...		Lus10035877 [exp]	23.7	0.7458
AT4G05090			Inositol monophosphatase famil...		Lus10007817 [exp]	24.5	0.7787
AT1G11340			S-locus lectin protein kinase ...		Lus10006745 [exp]	29.4	0.7470
AT2G41220		GLU2	glutamate synthase 2 (.1)		Lus10003820 [exp]	32.7	0.7665

Compare expression of checked genes

Lus10026952 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.