Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10630 325 / 6e-104 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2) AT2G24490 159 / 3e-45 ATRPA32A, RPA2, ATRPA2, ROR1 SUPPRESSOR OF ROS1, replicon protein A2 (.1.2) AT3G02920 118 / 5e-30 ATRPA32B Replication protein A, subunit RPA32 (.1.2) AT5G60390 110 / 4e-26 GTP binding Elongation factor Tu family protein (.1.2.3) AT1G07940 110 / 4e-26 GTP binding Elongation factor Tu family protein (.1.2) AT1G07930 110 / 4e-26 GTP binding Elongation factor Tu family protein (.1.2) AT1G07920 110 / 4e-26 GTP binding Elongation factor Tu family protein (.1) AT1G18070 105 / 4e-24 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3) AT1G35550 51 / 4e-08 elongation factor Tu C-terminal domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020153 [exp] 439 / 7e-148 AT5G10630 774 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2) Lus10020154 [exp] 412 / 1e-143 AT2G24490 243 / 3e-80 SUPPRESSOR OF ROS1, replicon protein A2 (.1.2) Lus10026952 [exp] 439 / 4e-141 AT4G31390 878 / 0.0 Protein kinase superfamily protein (.1.2) Lus10026954 [exp] 368 / 5e-126 AT2G24490 252 / 7e-84 SUPPRESSOR OF ROS1, replicon protein A2 (.1.2) Lus10015070 [exp] 115 / 4e-28 AT1G07930 684 / 0.0 GTP binding Elongation factor Tu family protein (.1.2) Lus10026488 [exp] 115 / 6e-28 AT1G07920 797 / 0.0 GTP binding Elongation factor Tu family protein (.1) Lus10019918 [exp] 115 / 1e-27 AT1G07920 891 / 0.0 GTP binding Elongation factor Tu family protein (.1) Lus10023174 [exp] 115 / 1e-27 AT1G07940 866 / 0.0 GTP binding Elongation factor Tu family protein (.1.2) Lus10019976 [exp] 112 / 1e-27 AT3G02920 258 / 8e-86 Replication protein A, subunit RPA32 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G275500 [exp] 362 / 5e-117 AT5G10630 757 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2) Potri.018G006500 [exp] 345 / 6e-112 AT5G10630 757 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2) Potri.006G275700 [exp] 248 / 6e-79 AT2G24490 251 / 3e-83 SUPPRESSOR OF ROS1, replicon protein A2 (.1.2) Potri.018G091700 [exp] 120 / 6e-31 AT3G02920 246 / 3e-81 Replication protein A, subunit RPA32 (.1.2) Potri.010G219500 [exp] 116 / 4e-28 AT5G60390 891 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.010G218800 [exp] 116 / 4e-28 AT5G60390 891 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.010G218700 [exp] 116 / 4e-28 AT5G60390 891 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.010G218600 [exp] 115 / 8e-28 AT5G60390 888 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.008G042700 [exp] 114 / 2e-27 AT5G60390 857 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.008G043100 [exp] 114 / 2e-27 AT5G60390 857 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF08784 [flax] [poplar] RPA_C Replication protein A C terminal CL0575 [flax] [poplar] EFTPs PF03144 [flax] [poplar] GTP_EFTU_D2 Elongation factor Tu domain 2 CL0575 [flax] [poplar] PF03143 [flax] [poplar] GTP_EFTU_D3 Elongation factor Tu C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10026953 pacid=23142852 polypeptide=Lus10026953 locus=Lus10026953.g ID=Lus10026953.BGIv1.0 annot-version=v1.0 ATGAGCGCGGGAAAAACAAACAATCGTCATGGCGGGAAAATGCTAATTTCTCCCGCCTTAATATACAACAAACCGAAGGAATTAGAAGCAGTAACACTCC ATTCTCGTCCCTTGATTCCCCAAAATTTCTTCTCGTTTTTTCTGTGCCGCGTCTCCAATCTCATTTCCCGAATCTCCGAATCTCCTCCCCCAGCATCCGT AAAAATGTTCTCCAGCGGCCAATTTGACGGCAACGCGCCTTTCTACCAGTCATCTCAGCTTCCGGATTCTACCCAATCTCCCGCCAAACAGAATCGTGAA TCTCATGGTTTACTCCCCCTGACGATCAAACAAATTAGCCAGGCTTCACAATCCGGTGATGAAAAATCGGACTTTGCGATCAACGGGGTTGATATCACCA ATGTTACGGTGGTTGGGATGGTGTCTGACAAAGCTGAAAAGATTACTGACGCCGGATTCACCATTGATGACGGGACTGGCCGTATTGGTTGCAAGAGATG GATGAATGACGGTTTTGACAAAATGGAAGTGGAGGGAATTTCGCCAGTGACCAACTTTGATGAGGTCTCTTTCCACTTCATTGACTGCATACACTCTCAT ATGCTGAATTCTAAAGCGAAGATGCAAGGTGGCGCTACTACTCTGGGAGAATCATCTTTTACTACTCCTGAACGGAAGAGTGAACCAACATCTTTCGCCA GCCAAAAGGACTGTGATCAGTTGGTCATTGAGTGTCTACGACAGTTTTCAGATATGGGACAAGAGAAAGGGATGCACATTGATGAAGTGTACAAACATCT GAAGCTCCCATCAGAGAAGATCAAGTACAGAGGACCTTATTTATTAGATGCAATTGATTCGCTTCAACCTCCAGCAAGAGATTTTGCGAAACCGCTGCTG ATGCCAATATGTGATGTAATAAAATCATCTTCACAAGGTCAGGTGTCAGCCTGTGGTAAATTGGAGGCTGGAGCACTTCGAAGTGGAATGAAGGTGCTGG TGATGCCGTCGGGAGAAGTAGGAACAATAAAGTCACTAGAGCGTGATTCACAGGGCTGTGCTGCCGCCAGAGCAGGGGACAACGTGGCCGTCAATCTTCA AGGAGTCGAGGGCAGTAATGTAATGCCAGGTGGTGTCATATGTCACCCTGACTATCCAGTTCGGGTTGCAAATCATTTGGAGTTGAAAGTGCTGGCATTA GAATTATCAATCCCAATCCTCAACGGCTCTCAGGTTGAATTCCACATACATCATGCACAAGAGGCTGGACGAGTGGCGAAAATTGTATCGCTACTTGATC CCAAGACGGGGAAGCAAACAAAGAGATCTCCCCGTTGCCTTGTGTCGAAGCAAAGTGCAGTGCTCGAGGTGGTTTTGAATGAGCCGGTATGTGTAGAAGA ATTCTCCAACAGCAGAGCTCTGGGAAGGGCGTTTCTGCGAGCAATGGGCACAACTATCGCAGTGGGCATCGTCACCAGGATTATCCAATGA
AA sequence Show only first row Show all	>Lus10026953 pacid=23142852 polypeptide=Lus10026953 locus=Lus10026953.g ID=Lus10026953.BGIv1.0 annot-version=v1.0 MSAGKTNNRHGGKMLISPALIYNKPKELEAVTLHSRPLIPQNFFSFFLCRVSNLISRISESPPPASVKMFSSGQFDGNAPFYQSSQLPDSTQSPAKQNRE SHGLLPLTIKQISQASQSGDEKSDFAINGVDITNVTVVGMVSDKAEKITDAGFTIDDGTGRIGCKRWMNDGFDKMEVEGISPVTNFDEVSFHFIDCIHSH MLNSKAKMQGGATTLGESSFTTPERKSEPTSFASQKDCDQLVIECLRQFSDMGQEKGMHIDEVYKHLKLPSEKIKYRGPYLLDAIDSLQPPARDFAKPLL MPICDVIKSSSQGQVSACGKLEAGALRSGMKVLVMPSGEVGTIKSLERDSQGCAAARAGDNVAVNLQGVEGSNVMPGGVICHPDYPVRVANHLELKVLAL ELSIPILNGSQVEFHIHHAQEAGRVAKIVSLLDPKTGKQTKRSPRCLVSKQSAVLEVVLNEPVCVEEFSNSRALGRAFLRAMGTTIAVGIVTRIIQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10630			Translation elongation factor ...		Lus10026953 [exp]	0	1
AT4G35740		ATRECQ3, RECQL3	A. THALIANA RECQ HELICASE 3, D...		Lus10028387 [exp]	1.7	0.8043
AT3G52260			Pseudouridine synthase family ...		Lus10023503 [exp]	10.9	0.7795
AT1G69450			Early-responsive to dehydratio...		Lus10036791 [exp]	13.7	0.7784
AT1G57610			Protein of unknown function (D...		Lus10019127 [exp]	13.9	0.7644
AT4G25550			Cleavage/polyadenylation speci...		Lus10014987 [exp]	14.6	0.7852
AT3G12380		ATARP5	actin-related protein 5 (.1.2)		Lus10040281 [exp]	19.5	0.7842
					Lus10039165 [exp]	20.3	0.7113
AT2G02470	Alfin	AL6	alfin-like 6 (.1.2)		Lus10026268 [exp]	23.0	0.7939
AT2G03670		CDC48B	cell division cycle 48B (.1)		Lus10042029 [exp]	27.6	0.7880
AT1G56350			Peptide chain release factor 2...		Lus10031411 [exp]	28.5	0.7667

Compare expression of checked genes

Lus10026953 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.