Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25480 506 / 4e-180 AtDNMT2, DNMT2 DNA METHYLTRANSFERASE 2, DNA methyltransferase-2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020155 [exp] 689 / 0 AT5G25480 428 / 4e-150 DNA METHYLTRANSFERASE 2, DNA methyltransferase-2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G250800 [exp] 541 / 0 AT5G25480 529 / 0.0 DNA METHYLTRANSFERASE 2, DNA methyltransferase-2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00145 [flax] [poplar] DNA_methylase C-5 cytosine-specific DNA methylase
Representative CDS sequence Show only first row Show all	>Lus10026955 pacid=23142796 polypeptide=Lus10026955 locus=Lus10026955.g ID=Lus10026955.BGIv1.0 annot-version=v1.0 ATGGCGGAAGGTTTTCTGAAACACAAAGATGAGCCATGGCGGGTACTTGAGTTCTATAGTGGCATTGGTGGCATGAGATATTCTCTAGAGAAGGCTTGCG TGAAAGTAGAAGTTGTGGAATCATTTGACATAAATGACACTGCCAATGATGTCTATGAACACAATTTTGGCCATCGCCCTTATCAGGCATGCACAAATAT TTTGCTATTTGGCACTTTTAGCATCCAACTAGATGGGAGGCGTGCAGGTAACATTCAGAGTTTGACAGCTTCCGATCTTGACAACTATCGGGCTCATGCA TGGCTTCTTTCCCCTCCTTGCCAACCATACACCCGCCAAGGTCTGCAGAAGCACTCAGGTGATGCCAGGGCATTTTCATTTCTCAGGATTCTTGAACTTA TACAAGAGATAAAACGACCGCCAAGTATGTTATTTGTGGAAAATGTTGTTGGATTCGAGACGTCTGACACACGCACAAAAATGATCGAGATATTAGTCAA TTCCGATTTCGTTACCCAAGAATTTATCTTGAGCCCATTGCAGTTTGGTGTGCCTTATTCCAGGCCACGTTACTTTTGCTTGGCCAAAAGAAAACCTTTA TGCTTCCGACATCGAGTCCTTAATAACCAACTTGTCCGGTCTTGTACCCCATTGCTTGAGCATAACGGAGATATTTTACCTGATGAACTTGATCAACCAC CAGATAGCATGGATAAGTTGCTGCAGTCTTGTAAACCTGTACAACATTTTCTCGAATTCAAGGACTTGAGTCATCAGGAAACCACAAGATCTACGTCCAA TAATTCAGAAGAGGGAGAGCACGGCGGCGCAAGCCCTAGAATGTCCGATCAGTATTTCGTTCCAGCAAGTCTGATCGATAGATGGGGCAACGCGATGGAT ATTGTATATCCTGATTCAAGGCGTTGCTGTTGTTTTACAAAGAGTTATTATAGATACGTGAAAGGCACTGGATCGCTTTTGGCTACTATCCAGCCGTTAG AAAAGGGTAAAACGACGACCCCATTGAAGGAGCAGGGACTAAGATTCTTCACTCCGAGAGAGGTGGCCAATATGCATTCATTTCCCATTGATTTTGAGTT CCCTCAACACATAAGCCTCAAACAACGCTATGCGTTGCTGGGAAATAGTTTAAGCGTAGCCGTTGTTGCTCCCTTGCTCAGCTACCTATTCGCCGAGCCA TCATGA
AA sequence Show only first row Show all	>Lus10026955 pacid=23142796 polypeptide=Lus10026955 locus=Lus10026955.g ID=Lus10026955.BGIv1.0 annot-version=v1.0 MAEGFLKHKDEPWRVLEFYSGIGGMRYSLEKACVKVEVVESFDINDTANDVYEHNFGHRPYQACTNILLFGTFSIQLDGRRAGNIQSLTASDLDNYRAHA WLLSPPCQPYTRQGLQKHSGDARAFSFLRILELIQEIKRPPSMLFVENVVGFETSDTRTKMIEILVNSDFVTQEFILSPLQFGVPYSRPRYFCLAKRKPL CFRHRVLNNQLVRSCTPLLEHNGDILPDELDQPPDSMDKLLQSCKPVQHFLEFKDLSHQETTRSTSNNSEEGEHGGASPRMSDQYFVPASLIDRWGNAMD IVYPDSRRCCCFTKSYYRYVKGTGSLLATIQPLEKGKTTTPLKEQGLRFFTPREVANMHSFPIDFEFPQHISLKQRYALLGNSLSVAVVAPLLSYLFAEP S

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25480		AtDNMT2, DNMT2	DNA METHYLTRANSFERASE 2, DNA m...		Lus10026955 [exp]	0	1
AT2G11000		ATMAK10	MAK10 homologue (.1.2)		Lus10005185 [exp]	2.6	0.8769
AT5G12230		MED19A	unknown protein		Lus10008738 [exp]	6.7	0.8515
AT5G28060			Ribosomal protein S24e family ...		Lus10015941 [exp]	10.7	0.8471
AT3G07740		HXA2, HXA02, HA...	homolog of yeast ADA2 2A (.1.2...		Lus10006383 [exp]	11.8	0.8456
AT4G08310			unknown protein		Lus10003736 [exp]	12.6	0.8489
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Lus10038817 [exp]	12.7	0.8063
AT2G21470		EMB2764, ATSAE2...	EMBRYO DEFECTIVE 2764, SUMO-ac...		Lus10028804 [exp]	16.2	0.8416
AT5G62760			P-loop containing nucleoside t...		Lus10042176 [exp]	19.0	0.8205
AT3G27530		MAG4, GC6	MAIGO 4, golgin candidate 6 (....		Lus10032089 [exp]	19.7	0.8550
AT2G33435			RNA-binding (RRM/RBD/RNP motif...		Lus10011791 [exp]	21.8	0.8158

Compare expression of checked genes

Lus10026955 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.