Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24450 122 / 2e-33 FLA3 FASCICLIN-like arabinogalactan protein 3 precursor (.1) AT3G12660 119 / 3e-32 FLA14 FASCICLIN-like arabinogalactan protein 14 precursor (.1) AT2G45470 114 / 5e-29 AGP8, FLA8 FASCICLIN-like arabinogalactan protein 8 (.1) AT3G60900 92 / 2e-21 FLA10 FASCICLIN-like arabinogalactan-protein 10 (.1) AT4G31370 89 / 1e-20 FLA5 FASCICLIN-like arabinogalactan protein 5 precursor (.1) AT4G12730 88 / 7e-20 FLA2 FASCICLIN-like arabinogalactan 2 (.1) AT5G55730 84 / 3e-18 FLA1 FASCICLIN-like arabinogalactan 1 (.1.2) AT3G46550 53 / 8e-08 FLA4, SOS5 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020158 [exp] 378 / 8e-134 AT2G24450 127 / 4e-35 FASCICLIN-like arabinogalactan protein 3 precursor (.1) Lus10042446 [exp] 176 / 3e-54 AT2G24450 105 / 7e-27 FASCICLIN-like arabinogalactan protein 3 precursor (.1) Lus10038004 [exp] 120 / 3e-33 AT2G45470 316 / 8e-108 FASCICLIN-like arabinogalactan protein 8 (.1) Lus10009235 [exp] 119 / 3e-31 AT2G45470 516 / 0.0 FASCICLIN-like arabinogalactan protein 8 (.1) Lus10026223 [exp] 113 / 1e-30 AT4G31370 66 / 5e-13 FASCICLIN-like arabinogalactan protein 5 precursor (.1) Lus10016617 [exp] 86 / 6e-19 AT5G55730 445 / 4e-155 FASCICLIN-like arabinogalactan 1 (.1.2) Lus10001178 [exp] 85 / 9e-19 AT4G12730 432 / 4e-150 FASCICLIN-like arabinogalactan 2 (.1) Lus10022517 [exp] 84 / 4e-18 AT5G55730 438 / 2e-152 FASCICLIN-like arabinogalactan 1 (.1.2) Lus10012344 [exp] 82 / 8e-18 AT4G12730 446 / 9e-156 FASCICLIN-like arabinogalactan 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G005100 [exp] 138 / 2e-39 AT2G24450 174 / 2e-53 FASCICLIN-like arabinogalactan protein 3 precursor (.1) Potri.006G276200 [exp] 136 / 3e-38 AT2G24450 159 / 4e-47 FASCICLIN-like arabinogalactan protein 3 precursor (.1) Potri.001G037800 [exp] 128 / 4e-35 AT3G12660 166 / 2e-49 FASCICLIN-like arabinogalactan protein 14 precursor (.1) Potri.014G071700 [exp] 115 / 7e-30 AT2G45470 494 / 2e-174 FASCICLIN-like arabinogalactan protein 8 (.1) Potri.014G168100 [exp] 87 / 2e-19 AT4G12730 427 / 6e-149 FASCICLIN-like arabinogalactan 2 (.1) Potri.011G093500 [exp] 85 / 9e-19 AT5G55730 432 / 4e-150 FASCICLIN-like arabinogalactan 1 (.1.2) Potri.001G367900 [exp] 79 / 9e-17 AT5G55730 454 / 5e-159 FASCICLIN-like arabinogalactan 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02469 [flax] [poplar] Fasciclin Fasciclin domain
Representative CDS sequence Show only first row Show all	>Lus10026957 pacid=23142804 polypeptide=Lus10026957 locus=Lus10026957.g ID=Lus10026957.BGIv1.0 annot-version=v1.0 ATGGGAACCAAGAATTTGGTATTCCTCGGCATAGCTTGCCTACTCTCCACCTGCTTCTCCACAAGGGCGGTGTACGCCGCCCCCTACAACATCACCGAGG TACTCGCCAAATACAGCGAATACTCCCAATTCAATGAACTCCTCACCTCAAGCGGCCTAGCCGAGACAATCAACTCCAAAGACCGAACCATCACCGTCCT AGTCGTCAACAATGGAGGCATTGGTTCCCTTTCGGGCAAGCCAGATGCCACAGTGAAAGCCGTCCTGAGCCTACACATCGTCCTGGATTACCTCGACAAG AACAAGATCCAGTCCCTGAACAAGACCACCACTATGACAACTCTGTACCAAGAAACCGGCAATGCCAAGAGCGACGAAGGATTCCTCAACGCCACCAAGA GTAGTGATAACAACAACCAATTGATGTTCGGTGATGGCAAGGAAAATGCTCAGCTATCATCCAGTTACATGAAGGTGGTGACCACACAGTCTTCCCACTA CTCCATTGTTGAAGTAAGCAGTGTGATCCAAGCTCCATGGGCTGAAAATGTCCATGGCTCCCCGCATATGGCTCCATCTTCCAGCCCCGACAGTGCCCCT GCGCCTTCTCGTAGACACAGGAAGATGGCTCCTTCATCTTCCGACTCCCCTCCTGTTCCCTCAGACTCCAAAAATGCTGATGATTCCTCGGCTCCATCAC CAGGGACAAGCTCTGCTTCATCTTTGCACGCTGCAGCTGGTGGCCTCGCTGCTTCCCTTGCCATCGCGTTCATGATGAGTTTCTAG
AA sequence Show only first row Show all	>Lus10026957 pacid=23142804 polypeptide=Lus10026957 locus=Lus10026957.g ID=Lus10026957.BGIv1.0 annot-version=v1.0 MGTKNLVFLGIACLLSTCFSTRAVYAAPYNITEVLAKYSEYSQFNELLTSSGLAETINSKDRTITVLVVNNGGIGSLSGKPDATVKAVLSLHIVLDYLDK NKIQSLNKTTTMTTLYQETGNAKSDEGFLNATKSSDNNNQLMFGDGKENAQLSSSYMKVVTTQSSHYSIVEVSSVIQAPWAENVHGSPHMAPSSSPDSAP APSRRHRKMAPSSSDSPPVPSDSKNADDSSAPSPGTSSASSLHAAAGGLAASLAIAFMMSF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24450		FLA3	FASCICLIN-like arabinogalactan...		Lus10026957 [exp]	0	1
AT4G10750			Phosphoenolpyruvate carboxylas...		Lus10000223 [exp]	1.7	0.7828
AT1G57610			Protein of unknown function (D...		Lus10019127 [exp]	7.9	0.7566
AT1G08070		EMB3102, OTP82	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10001168 [exp]	9.2	0.7192
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10024910 [exp]	12.4	0.8007
AT1G68390			Core-2/I-branching beta-1,6-N-...		Lus10036610 [exp]	13.2	0.7831
AT5G48140			Pectin lyase-like superfamily ...		Lus10013784 [exp]	21.1	0.7685
AT5G63800		MUM2, BGAL6	MUCILAGE-MODIFIED 2, beta-gala...		Lus10033500 [exp]	23.2	0.7529
AT3G47570			Leucine-rich repeat protein ki...		Lus10030636 [exp]	25.6	0.7741
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10014110 [exp]	27.0	0.6873
AT2G17080			Arabidopsis protein of unknown...		Lus10023962 [exp]	27.0	0.7400

Compare expression of checked genes

Lus10026957 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.