Plant FIBer expression Database

Lus10026958 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G24440 137 / 6e-41 selenium binding (.1)
AT4G31360 130 / 2e-38 selenium binding (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020159
[exp]
164 / 2e-48 AT4G31350 423 / 4e-146 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G004901
[exp]
140 / 5e-42 AT4G31360 145 / 8e-44 selenium binding (.1)
Potri.006G276300
[exp]
50 / 9e-08 AT4G31360 0 / 1 selenium binding (.1)
PFAM info
Representative CDS sequence
>Lus10026958 pacid=23142911 polypeptide=Lus10026958 locus=Lus10026958.g ID=Lus10026958.BGIv1.0 annot-version=v1.0
ATGGCTCCGAAGAAGCAACCGTCCAACGAAGAACAGCTGGTTACTACCCGCAGCGCCACCCTGGCCGCCGGTAGGGTGACGCGGAGCCAGTCGAAAGGCG
GGAAAGAAAAGCTAAGAGCTCCCGTTCTAGCGTCTCCCAAGAAGAAGAAGGCGAAAACCGCGGCGCCAAAGAAGAAGAAGACCGAGGATGTTGCCGAGCC
TGAGGTGGAAAAGCAGCCCGAGACTACTGCGGAAGAAAAAGAGCAAGAAAACGCCCCCGAAAATGGCGAGGTCAAGAACGATGGCAAGGATGAAGCTCAG
GGCACTGACGCTGCTTTAGGAAAGAAGACTATTGTCGTCGAACACTGCAAACAGTGCAAGTCATTTAAAGTGAGGGCTGATCAGGTGAAACTTGGTTTGG
AGAAAGCTATCCCTGGTATCGTGGTTGAACTCAATCCTGAAAAGCCTAGAAGGGGATGTTTCGAGGTACGAGAGGAGGGAGGGGAAGTCTTCATCAGTCT
TGAGAATATGCCGCGCCCATTCAAAAAAATGAAGGATCTTGACATGGATGAAGTTGTGGCAGACATTGTTGGTAAGATCAAATGA
AA sequence
>Lus10026958 pacid=23142911 polypeptide=Lus10026958 locus=Lus10026958.g ID=Lus10026958.BGIv1.0 annot-version=v1.0
MAPKKQPSNEEQLVTTRSATLAAGRVTRSQSKGGKEKLRAPVLASPKKKKAKTAAPKKKKTEDVAEPEVEKQPETTAEEKEQENAPENGEVKNDGKDEAQ
GTDAALGKKTIVVEHCKQCKSFKVRADQVKLGLEKAIPGIVVELNPEKPRRGCFEVREEGGEVFISLENMPRPFKKMKDLDMDEVVADIVGKIK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G24440 selenium binding (.1) Lus10026958
[exp]
0 1
AT2G18350 ZF_HD ATHB24, ZHD6 ZINC FINGER HOMEODOMAIN 6, hom... Lus10007147
[exp]
1.4 0.9845
AT4G27660 unknown protein Lus10032928
[exp]
3.9 0.9729
AT4G31350 Core-2/I-branching beta-1,6-N-... Lus10020159
[exp]
4.6 0.9444
AT5G48480 Lactoylglutathione lyase / gly... Lus10020399
[exp]
5.9 0.9659
AT5G39760 ZF_HD ATHB23, ZHD10 ZINC FINGER HOMEODOMAIN 10, ho... Lus10030473
[exp]
7.5 0.9584
AT5G28640 ATGIF1, GIF1, A... ARABIDOPSIS GRF1-INTERACTING F... Lus10005524
[exp]
8.1 0.9631
AT2G02540 ZF_HD ATHB21, ZFHD4, ... ZINC FINGER HOMEODOMAIN 3, ZIN... Lus10010693
[exp]
8.4 0.9730
AT1G11120 unknown protein Lus10039796
[exp]
8.7 0.9542
AT2G15220 Plant basic secretory protein ... Lus10013869
[exp]
9.5 0.9558
AT3G61250 MYB LMI2, ATMYB17 LATE MERISTEM IDENTITY2, myb d... Lus10030378
[exp]
10.2 0.9320

Lus10026958 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.