Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31350 478 / 3e-169 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT2G19160 444 / 2e-155 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G57270 444 / 2e-155 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2.3) AT4G30060 439 / 3e-153 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT4G25870 427 / 7e-149 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT3G21310 230 / 7e-72 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G25970 226 / 2e-70 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G11730 224 / 1e-69 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G16170 224 / 4e-69 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G73810 223 / 9e-69 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020159 [exp] 677 / 0 AT4G31350 423 / 4e-146 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10025464 [exp] 494 / 4e-175 AT2G19160 550 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10006952 [exp] 431 / 3e-150 AT2G19160 503 / 9e-179 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10005504 [exp] 226 / 7e-70 AT5G11730 499 / 1e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10005505 [exp] 226 / 7e-70 AT5G11730 499 / 1e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10007457 [exp] 226 / 3e-68 AT5G11730 489 / 1e-170 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10036774 [exp] 216 / 2e-66 AT5G16170 350 / 1e-118 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10009738 [exp] 212 / 7e-65 AT3G21310 511 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10003499 [exp] 211 / 2e-64 AT3G21310 503 / 3e-179 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G143900 [exp] 502 / 2e-178 AT2G19160 564 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G076600 [exp] 490 / 1e-173 AT2G19160 560 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.001G195900 [exp] 235 / 6e-74 AT3G21310 504 / 8e-180 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G097700 [exp] 233 / 6e-73 AT5G16170 452 / 6e-159 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.015G045400 [exp] 233 / 1e-72 AT1G68390 390 / 2e-134 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G233400 [exp] 228 / 3e-71 AT5G11730 557 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.018G059100 [exp] 228 / 6e-71 AT5G11730 548 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.010G121900 [exp] 228 / 1e-70 AT5G11730 409 / 1e-141 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.010G121800 [exp] 226 / 4e-70 AT1G68390 399 / 1e-137 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.003G001700 [exp] 221 / 3e-68 AT1G10280 543 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF02485 [flax] [poplar] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Lus10026959 pacid=23142813 polypeptide=Lus10026959 locus=Lus10026959.g ID=Lus10026959.BGIv1.0 annot-version=v1.0 ATGCAAATGAAGACGAGCAGTTGGGCGTGGTGGTGGGTGGGGATGAGGGACTACATAATATCGCATCCTAACTCTAGACAACGACAGCATGTGAAGAGGC CGCCAAAGTGGATCCTTTTGTTATTCTGCTTACTTGCCGCAACTGTGTTCATGTTGGGTGTCTACTACGTTTTCCAACCTAGAAACCCCATCTCCAACCC GCCTTGCTCTGTATTTGCTCCCGGCGGGTGCGCTACTTACGACGGAACTCGACTCGTTCCGGCTCGACAGCTCACCGACGAGGAGACCACTGCCCAGGTT GTCATCCGCGAAATACTCAACAACCCTCCTCCCGTTTTGAAAAACCCAAAGATCGCTTTCATGTTCTTGACTCCTGCTTCGCTTCCTTTCGAAAAGCTCT GGGAGAAGTTCTTTGAGGGTCATGAGGACAGATTTACCGTCTATGTACATTCATCGAGGAATAAACCGGCTCATATCAGTCGCTACTTCGCTGGCCGAGA CATCCATAGTGACAAGGTGGAATGGGGGAAAATTTCAATGGTTGATGCTGAAAGAAGACTACTAGCTCATGCACTGCTGGATCCAGATAACCACCAATTT ATCTTGCTTTCCGATAGTTGCATACCACTCCGTACCTTTAACTATGTGTATAACTATCTGATGTTCACTAACGTCAGCTATATAGACAGCTTTGTGGATC CTGGTCCTCATGGAAACGGAAGATACTCAGAGCACATGTATCCCGAAGTTCAATTTGGTGATTTCCGAAAGGGTGCACAATGGTTTTCGATGAAGCGGCA ACACGCCATCATAGTAATGGCGGACAGCTTATACTACAGAAAGTTCAGGCTTTACTGCAGGCCAAATATGAATGGGAAAAATTGCTATTCCGATGAGCAT TACCTCCAAACATTTTTCACGATGATTGACCCTCATGGAATTTCAAAGTGGTCCGTTACCCATGTCGATTGGTCCGAAGGAAAGTGGCATCCAAGGTCCT ATAGATCCGCTGATATCACTTACGACCTCCTCAAAAACCTTACAACTGTCGATGAGGCCATACATGTCACAAGTGAGGGAAAAAAGACAACGACATGGAG GCCTTGTTACTGGAATGGAGTGAAGCGGCCATGCTACTTGTTTGCGAGGAAATTTTACCCAGAAACTATGGATAAATTGTTGTACCATTTCTCCAATTAT ACAAGGGCTTAA
AA sequence Show only first row Show all	>Lus10026959 pacid=23142813 polypeptide=Lus10026959 locus=Lus10026959.g ID=Lus10026959.BGIv1.0 annot-version=v1.0 MQMKTSSWAWWWVGMRDYIISHPNSRQRQHVKRPPKWILLLFCLLAATVFMLGVYYVFQPRNPISNPPCSVFAPGGCATYDGTRLVPARQLTDEETTAQV VIREILNNPPPVLKNPKIAFMFLTPASLPFEKLWEKFFEGHEDRFTVYVHSSRNKPAHISRYFAGRDIHSDKVEWGKISMVDAERRLLAHALLDPDNHQF ILLSDSCIPLRTFNYVYNYLMFTNVSYIDSFVDPGPHGNGRYSEHMYPEVQFGDFRKGAQWFSMKRQHAIIVMADSLYYRKFRLYCRPNMNGKNCYSDEH YLQTFFTMIDPHGISKWSVTHVDWSEGKWHPRSYRSADITYDLLKNLTTVDEAIHVTSEGKKTTTWRPCYWNGVKRPCYLFARKFYPETMDKLLYHFSNY TRA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31350			Core-2/I-branching beta-1,6-N-...		Lus10026959 [exp]	0	1
AT1G78980		SRF5	STRUBBELIG-receptor family 5 (...		Lus10033333 [exp]	4.2	0.7377
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Lus10024572 [exp]	7.3	0.7096
AT5G16600	MYB	ATMYB43	myb domain protein 43 (.1)		Lus10010974 [exp]	12.7	0.7384
AT3G18200			nodulin MtN21 /EamA-like trans...		Lus10021200 [exp]	21.1	0.7046
AT1G06240			Protein of unknown function DU...		Lus10017666 [exp]	21.2	0.6621
AT4G30880			Bifunctional inhibitor/lipid-t...		Lus10016357 [exp]	29.3	0.7090
					Lus10020274 [exp]	29.5	0.6863
					Lus10023136 [exp]	41.4	0.6818
					Lus10011497 [exp]	50.8	0.6729
AT5G64790			O-Glycosyl hydrolases family 1...		Lus10006811 [exp]	59.0	0.6634

Compare expression of checked genes

Lus10026959 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.