Plant FIBer expression Database

Lus10026960 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G16810 95 / 7e-26 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033383
[exp]
98 / 3e-27 AT1G16810 136 / 4e-42 unknown protein
Lus10034837
[exp]
96 / 3e-26 AT1G16810 133 / 7e-41 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G174400
[exp]
113 / 3e-33 AT1G16810 121 / 3e-36 unknown protein
Potri.010G253400
[exp]
100 / 5e-28 AT1G16810 113 / 5e-33 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF08555 DUF1754 Eukaryotic family of unknown function (DUF1754)
Representative CDS sequence
>Lus10026960 pacid=23142794 polypeptide=Lus10026960 locus=Lus10026960.g ID=Lus10026960.BGIv1.0 annot-version=v1.0
ATGTCGACCTCGTCGTACGAGAATGTAGTGGGTGGAAAGCTACGGCTGAAAGGGAAGCCATTGCTGGTGAGAGATGGCGCAGTCACAAAGAAGAAAAAGA
AGCACAGAATCAATAAGCAATTCCGTCACGATCATTCAGTCTCACCAGGTGGAAAGAGTGGCGATGCAGGTGATCAAGCAGGAGCTATGGAGAAAGGAGA
CGCTGCTGGATCCAATTACAACGATCATCTTACAGCAGCCGAAAGGCGGTATCTCCAGCAGTTGGAGAAACTGGATAGCCAAAGGATGGCTAAAATGGCA
AGCAAGTCTCACCGCGACCGGATTCACGAATTCAACCAGTATCTGGCCAATCTTACCGAGCATTACGACATTCCTAAAGTTGGCCCTGGCTAG
AA sequence
>Lus10026960 pacid=23142794 polypeptide=Lus10026960 locus=Lus10026960.g ID=Lus10026960.BGIv1.0 annot-version=v1.0
MSTSSYENVVGGKLRLKGKPLLVRDGAVTKKKKKHRINKQFRHDHSVSPGGKSGDAGDQAGAMEKGDAAGSNYNDHLTAAERRYLQQLEKLDSQRMAKMA
SKSHRDRIHEFNQYLANLTEHYDIPKVGPG

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G16810 unknown protein Lus10026960
[exp]
0 1
AT1G11840 ATGLX1 glyoxalase I homolog (.1.2.3.4... Lus10002943
[exp]
1.0 0.9216
AT4G02450 HSP20-like chaperones superfam... Lus10000340
[exp]
2.8 0.9202
AT1G12240 ATBETAFRUCT4, V... VACUOLAR INVERTASE, Glycosyl h... Lus10004340
[exp]
3.9 0.9002
AT3G03310 ATLCAT3 ARABIDOPSIS LECITHIN:CHOLESTER... Lus10026853
[exp]
5.1 0.8750
AT3G07090 PPPDE putative thiol peptidase... Lus10038168
[exp]
5.3 0.8941
AT3G12050 Aha1 domain-containing protein... Lus10021072
[exp]
6.2 0.9109
AT4G39520 GTP-binding protein-related (.... Lus10006801
[exp]
7.7 0.8710
AT5G12020 HSP17.6II 17.6 kDa class II heat shock p... Lus10026453
[exp]
10.1 0.8942
AT1G30070 SGS domain-containing protein ... Lus10038500
[exp]
11.1 0.9053
AT2G35900 unknown protein Lus10021249
[exp]
12.2 0.8524

Lus10026960 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.